Factsheet for Os07t0615400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os03t0660700-01
Os04t0617700-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	Os03t0660700-01	AT1G16500.1	21798944
AT3G14100.1	Os04t0617700-01	AT1G16500.1	21798944
AT3G14100.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G14100.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G176700.1	Wheat	nucleus	83.61	83.8
TraesCS2B01G195400.1	Wheat	nucleus	83.84	83.45
TraesCS2A01G169100.1	Wheat	nucleus	83.61	83.41
GSMUA_Achr6P11660_001	Banana	mitochondrion	72.83	73.52
GSMUA_Achr10P...	Banana	mitochondrion	72.6	72.94
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	71.9	72.75
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	70.73	72.42
Solyc06g063000.2.1	Tomato	nucleus	70.73	72.42
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	70.73	71.9
HORVU2Hr1G031260.2	Barley	nucleus, plastid	83.61	71.83
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	72.37	71.2
KRH47641	Soybean	nucleus	70.02	70.85
KRH06218	Soybean	nucleus	68.62	70.43
GSMUA_Achr11P...	Banana	nucleus	71.9	69.14
PGSC0003DMT400058919	Potato	nucleus	67.21	68.82
KRH19347	Soybean	mitochondrion, nucleus	66.04	68.78
KRH02581	Soybean	mitochondrion	66.51	68.77
Solyc03g122180.2.1	Tomato	nucleus	66.98	68.59
AT1G17370.1	Thale cress	mitochondrion, nucleus	66.28	67.54
Solyc07g042180.2.1	Tomato	nucleus	62.76	67.34
CDY63384	Canola	mitochondrion, nucleus	65.81	67.22
Bra030985.1-P	Field mustard	mitochondrion, nucleus	65.81	67.22
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	63.0	67.08
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	63.0	67.08
PGSC0003DMT400066072	Potato	nucleus	64.17	66.83
Bra030908.1-P	Field mustard	nucleus	65.57	66.83
AT3G14100.1	Thale cress	nucleus	66.74	66.74
CDY02486	Canola	nucleus	65.34	66.43
CDY61476	Canola	nucleus	65.11	66.35
CDY51403	Canola	nucleus	65.11	66.19
Bra037962.1-P	Field mustard	nucleus	64.87	65.8
Os11t0620100-01	Rice	nucleus	67.68	65.53
CDY33092	Canola	nucleus	64.64	64.94
AT1G54080.2	Thale cress	nucleus	64.17	63.72
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	73.07	62.9
Os08t0520300-01	Rice	nucleus	62.06	59.28
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	19.2	56.16
CDX81822	Canola	mitochondrion, nucleus	65.81	51.56
Os02t0567900-01	Rice	cytosol, nucleus	18.97	31.27
Os04t0449900-01	Rice	plastid	24.82	27.39
Os03t0569900-01	Rice	nucleus	25.53	27.11
Os04t0625800-01	Rice	nucleus	26.23	26.35
Os07t0516900-01	Rice	plastid	15.22	25.9
Os08t0190200-00	Rice	nucleus	25.53	24.66
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	25.06	24.26
Os03t0174100-02	Rice	nucleus	22.72	23.32
Os10t0457000-01	Rice	nucleus	16.16	19.44
Os04t0504800-01	Rice	plasma membrane	22.01	14.26
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.08	13.91
Os09t0115400-01	Rice	nucleus	21.55	13.9
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	20.84	13.48
Os04t0682400-01	Rice	nucleus	24.12	10.22
Os06t0589700-01	Rice	cytosol, extracellular	7.73	8.27

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	EntrezGene:4343900	EMBL:AK103536	EMBL:AK119233	ProteinID:BAC16506.1
ProteinID:BAF22183.1	ProteinID:BAT02644.1	ProteinID:EEE67589.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os07g0615400	EnsemblPlants:Os07t0615400-01
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4	UniProt:Q8H393	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI00000AD853
RefSeq:XP_015644593.1	SEG:seg	:	:	:	:

Description

Similar to Oligouridylate binding protein. (Os07t0615400-01);Hypothetical conserved gene. (Os07t0615400-02)

Coordinates

chr7:+:25357841..25362755

Molecular Weight (calculated)

46726.2 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.437

Length

427 amino acids

Sequence
(BLAST)

001: MLPQQQQQQK QQAAALMPPS MYAMPPPPPL HHHHHPLLAA APPQQQIEPI LTGNLPPGFD TSTCRSVYVG NVHVQVTEAL LREVFQSTGL VEGCKLIRKE
101: KSSYGFVDYY DRRSAALSIL TLNGKQIFGQ LIRVNWAYAS GQREDTTDHF NIFVGDLSPE VTDSALFAFF SGYSSCSDAR VMWDQKTGRS RGYGFVSFRN
201: QQDAQSAIND LNGQWLGSRQ IRCNWATKGA SNGEQQTSDS KNVADLTNNL TEDGKEKANE DAPENNPQYR TVYVGNLAHE VTQDVLHRLF HALGAGAIEE
301: VRIQLGKGFG FVRYSNHAEA ALAIQMGNGR ILGGKPIKCS WGNKPTPPGT TSAPLPPPAA PSVTAADLLE YQRSLALSKM VSSQALMQAQ AQQHLKQAMG
401: MGAGVSQAMY DASFPNVGPS QQQLMYY

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.