Factsheet for Os03t0569900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91463	Sorghum	nucleus	87.81	86.31
Zm00001d013812_P001	Maize	nucleus	87.06	86.21
GSMUA_Achr6P29410_001	Banana	nucleus	60.2	73.78
GSMUA_Achr9P24980_001	Banana	cytosol	60.7	73.72
GSMUA_Achr10P...	Banana	nucleus	70.9	65.67
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	62.69	61.92
Os04t0625800-01	Rice	nucleus	64.93	61.41
Os08t0190200-00	Rice	nucleus	66.42	60.41
Os02t0567900-01	Rice	cytosol, nucleus	35.32	54.83
Os07t0516900-01	Rice	plastid	34.08	54.58
Os03t0174100-02	Rice	nucleus	51.49	49.76
TraesCS2D01G266400.1	Wheat	nucleus	44.03	49.72
TraesCS2A01G256500.1	Wheat	nucleus	43.53	49.16
Os04t0449900-01	Rice	plastid	46.02	47.8
HORVU2Hr1G064650.4	Barley	nucleus	37.56	44.28
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	47.76	43.54
Os07t0615400-01	Rice	nucleus	27.11	25.53
Os08t0520300-01	Rice	nucleus	27.61	24.83
Os11t0620100-01	Rice	nucleus	26.12	23.81
Os10t0457000-01	Rice	nucleus	15.92	18.03
Os04t0504800-01	Rice	plasma membrane	24.63	15.02
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	23.13	14.09
Os09t0115400-01	Rice	nucleus	23.13	14.05
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.65	12.83
Os06t0589700-01	Rice	cytosol, extracellular	8.96	9.02
Os04t0682400-01	Rice	nucleus	20.4	8.13

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EntrezGene:4333283	ProteinID:AAG59664.1	ProteinID:ABF97192.1	EMBL:AK101593
ProteinID:BAS84979.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0569900	EnsemblPlants:Os03t0569900-01	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF9	UniProt:Q10HZ8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00000A2B7E	RefSeq:XP_015633198.1	SEG:seg	:	:

Description

Similar to RNA Binding Protein 45. (Os03t0569900-01);Hypothetical conserved gene. (Os03t0569900-02);Similar to RNA recognition motif family protein, expressed. (Os03t0569900-03)

Coordinates

chr3:-:20655023..20661172

Molecular Weight (calculated)

43948.2 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.747

Length

402 amino acids

Sequence
(BLAST)

001: MMQPPPPPQW AMGPPPPPQY FQAGPPPPPP QYFQGAHPPA AMWGQPPPPQ AAPPPAPAGG AAGDEVRTLW IGDLQFWMEE NYLYNCFSQA GELISAKIIR
101: NKQTGQPEGY GFIEFGSHAI AEQVLQGYNG QMMPNGNQVF KLNWATSGAG EKRGDDGSDY TIFVGDLASD VTDLILQDTF KAHYQSVKGA KVVFDRSTGR
201: SKGYGFVKFG DLDEQTRAMT EMNGQYCSSR PMRIGPASNK KNIGGQQQPS ATYQNTQGTD SDSDPNNTTV FVGGLDPSVT DEVLKQAFSP YGELVYVKIP
301: VGKRCGFVQY SNRASAEEAI RMLNGSQLGG QSIRLSWGRS PGNKQPQQDQ NQWNAGYYGY PPQGYDPYGY VRPPQDPAMY AYAAYPGYGN YQQPAPQQPP
401: QQ

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.