Factsheet for Os03t0278500-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G099500.1	Wheat	cytosol	77.59	76.99
TraesCS4D01G205700.1	Wheat	cytosol	77.59	76.88
TraesCS4B01G204800.1	Wheat	cytosol	76.82	76.34
HORVU4Hr1G059070.1	Barley	cytosol	76.66	75.84
KXG40160	Sorghum	nucleus	75.12	67.41
Zm00001d047790_P001	Maize	plastid	74.5	65.58
VIT_08s0007g04380.t01	Wine grape	cytosol	46.68	47.63
Solyc10g085750.1.1	Tomato	nucleus	45.13	46.95
KRH32613	Soybean	cytosol	35.39	46.83
KRH19986	Soybean	cytosol	35.7	46.67
PGSC0003DMT400021673	Potato	cytosol	45.29	46.66
KRH67800	Soybean	cytosol	44.67	45.73
KRG96088	Soybean	cytosol	44.36	45.13
GSMUA_Achr9P10860_001	Banana	cytosol	49.15	44.48
PGSC0003DMT400033802	Potato	cytosol	41.73	44.41
CDY72408	Canola	plastid	6.34	44.09
Solyc09g008620.1.1	Tomato	cytosol	41.11	43.97
Bra034301.1-P	Field mustard	mitochondrion	7.26	42.34
AT2G36660.1	Thale cress	cytosol, plastid	38.64	41.05
CDY33264	Canola	mitochondrion, nucleus	11.75	38.0
CDY57754	Canola	nucleus	12.21	37.09
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	37.71	36.97
Os09t0115400-01	Rice	nucleus	37.71	36.86
Os04t0504800-01	Rice	plasma membrane	37.25	36.57
Os06t0589700-01	Rice	cytosol, extracellular	20.56	33.33
CDY30168	Canola	cytosol	27.36	32.9
CDY56198	Canola	cytosol	24.57	32.52
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.19	31.23
Os10t0457000-01	Rice	nucleus	14.37	26.2
Os07t0516900-01	Rice	plastid	8.66	22.31
Os03t0174100-02	Rice	nucleus	13.6	21.15
Os07t0615400-01	Rice	nucleus	13.91	21.08
Os03t0569900-01	Rice	nucleus	12.83	20.65
Os04t0449900-01	Rice	plastid	12.06	20.16
Os11t0620100-01	Rice	nucleus	13.6	19.95
Os08t0190200-00	Rice	nucleus	13.45	19.68
Os02t0567900-01	Rice	cytosol, nucleus	7.73	19.3
Os04t0625800-01	Rice	nucleus	12.52	19.06
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	12.98	19.05
Os08t0520300-01	Rice	nucleus	13.14	19.02
Os04t0682400-01	Rice	nucleus	14.06	9.03

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EntrezGene:4332428	ProteinID:ABF95285.1	EMBL:AK070850
ProteinID:BAF11641.1	ProteinID:BAS83544.1	ncoils:Coil	ProteinID:EEE58801.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0278500	EnsemblPlants:Os03t0278500-01
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	UniProt:Q10N87	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI0000DB45A9	RefSeq:XP_015630119.1	SEG:seg	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0278500-01)

Coordinates

chr3:+:9461167..9465395

Molecular Weight (calculated)

72632.0 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.434

Length

647 amino acids

Sequence
(BLAST)

001: MAAQEMEVMM VAMAAEAPVA VEVEAVPAVA GGLNATVPAL YVGDLHESVR EEHLLEVFGK IGTLTSVRVC RDNATSNSLR YGYVNYLSQA DAAIALEKLN
101: HSLILDKPIR VMWSNRDPDA RRSGVGNVFV KNLNDLVDNV SLQELFCKFG DILSCKVAKN EDGTSRGYGF VQFALQESAD ASIQNLNNSH FCGRQLHVAT
201: FIKKSERSTN NDDKYTNLYM KNLDDDITEE LIKLKFSQYG LVISVKIMKR DDGTSKGFGF VSFQNPESAK RAKESMNGML LGSKTLYVAR AQKKAERKQY
301: LQRLHEEKRN EIITKSNGSN VYIKNINDEV GDDALRERFN EFGNITSAKI MRDEKGISKG FGFVCYNTPE EAKCAVSNMR GVMFYGKPLY VAIAQRKEER
401: RAKLEQRFAE LATMVGATSP VIPTGYPQFY FAHPSTHLPQ SPGRQGFMYP PIGISQEWRH NMFPSSHNIQ QIHSPIMRNT PRQYRNNRGR MNGNMMHFHH
501: TVNYVPHAQP AKEFMSMSRQ RFSHAKYIPN DIMANGLAIH HGDSISSMND AFNNLLATAP PEEQKNMLGN RLYPLVERHH PDLASKITGM LLELGNSEVV
601: MLLYSSNMLS AKIEECVKLL QEVKPKPEDQ EALHPGFLLD SAGVNAN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.