Factsheet for Os02t0567900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G204400.1	Wheat	mitochondrion	91.12	62.27
Os04t0449900-01	Rice	plastid	89.19	59.69
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	90.73	56.35
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	90.35	56.12
EES05289	Sorghum	plastid	93.05	55.4
Zm00001d050838_P001	Maize	plastid	91.12	54.88
GSMUA_Achr10P...	Banana	nucleus	65.25	53.82
GSMUA_Achr6P10190_001	Banana	nucleus	64.86	53.67
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	90.73	51.54
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	90.35	49.37
Bra027446.1-P	Field mustard	cytosol	58.3	47.19
PGSC0003DMT400020621	Potato	nucleus	66.41	43.43
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	71.81	42.18
CDY06734	Canola	mitochondrion	49.42	41.97
KRH61258	Soybean	nucleus	65.64	41.56
GSMUA_Achr3P01720_001	Banana	mitochondrion	63.32	40.69
KRH05723	Soybean	nucleus	64.09	40.19
VIT_18s0001g11080.t01	Wine grape	nucleus	64.48	39.95
KRH15315	Soybean	nucleus	63.71	38.82
KRH51956	Soybean	nucleus	61.39	38.69
Solyc04g079310.2.1	Tomato	nucleus	66.41	38.14
Bra018813.1-P	Field mustard	mitochondrion, nucleus	56.37	37.44
VIT_03s0063g00850.t01	Wine grape	nucleus	59.07	36.96
AT1G47500.1	Thale cress	nucleus	61.78	36.87
Solyc01g108500.2.1	Tomato	nucleus	58.69	36.8
PGSC0003DMT400066648	Potato	nucleus	59.07	36.43
AT1G47490.1	Thale cress	nucleus	60.62	36.34
CDY52067	Canola	nucleus	58.3	36.04
CDX95176	Canola	nucleus	57.92	35.8
Os03t0569900-01	Rice	nucleus	54.83	35.32
CDY16528	Canola	nucleus	55.98	34.2
CDY29341	Canola	nucleus	55.21	34.13
KRH71168	Soybean	nucleus	56.76	34.11
CDY28101	Canola	nucleus	56.37	34.03
CDY32840	Canola	nucleus	55.21	33.97
Solyc10g050860.1.1	Tomato	nucleus	55.98	33.88
CDY68866	Canola	nucleus	54.05	33.73
CDY50959	Canola	nucleus	55.98	33.72
Os03t0174100-02	Rice	nucleus	54.05	33.65
KRH50251	Soybean	nucleus	55.21	33.18
Os04t0625800-01	Rice	nucleus	54.44	33.18
CDY22988	Canola	nucleus	52.51	32.38
CDX92304	Canola	nucleus	52.51	32.08
Bra022389.1-P	Field mustard	nucleus	52.51	31.92
Os08t0190200-00	Rice	nucleus	54.44	31.9
CDX99265	Canola	nucleus	52.12	31.84
AT3G19130.1	Thale cress	nucleus	53.28	31.72
CDX95462	Canola	nucleus	52.9	31.57
CDY18570	Canola	nucleus	52.51	31.34
CDX82310	Canola	nucleus	49.42	31.07
Bra001735.1-P	Field mustard	nucleus	49.42	31.07
Bra040663.1-P	Field mustard	nucleus	44.4	30.91
AT1G49600.3	Thale cress	nucleus	50.19	28.89
Bra037538.1-P	Field mustard	nucleus	42.47	27.3
Os07t0516900-01	Rice	plastid	26.25	27.09
Bra014216.1-P	Field mustard	nucleus	45.95	20.8
Os07t0615400-01	Rice	nucleus	31.27	18.97
Os08t0520300-01	Rice	nucleus	32.05	18.57
Os11t0620100-01	Rice	nucleus	30.5	17.91
GSMUA_Achr6P09470_001	Banana	nucleus	9.27	16.33
Os10t0457000-01	Rice	nucleus	14.67	10.7
Os09t0115400-01	Rice	nucleus	27.03	10.57
Os04t0504800-01	Rice	plasma membrane	25.48	10.02
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	25.48	10.0
Os06t0589700-01	Rice	cytosol, extracellular	14.67	9.52
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.3	7.73
Os04t0682400-01	Rice	nucleus	23.17	5.95

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	ProteinID:BAF09094.1	ProteinID:BAS79324.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os02g0567900
EnsemblPlants:Os02t0567900-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF7	UniProt:Q0E094
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000DF075F	SEG:seg

Description

Similar to H0818E04.14 protein. (Os02t0567900-01)

Coordinates

chr2:+:21598138..21602376

Molecular Weight (calculated)

28286.0 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.642

Length

259 amino acids

Sequence
(BLAST)

001: HVMPNTDRAF KLNWASYSMG EKRAELASDH SIFVGDLAVD VTDEMLMDLF AKKYRSVKGA KVIIDANTGR SRGYGFVRFG DDNDKTHAMT EMNGAYCSTR
101: PIRIGPATPR RSSGDSGSSP PRQSDSDSTN RTIYVGGLDP NATEDELRKA FAKYGDLASV KIPVGKQCGF VQFVNRPDAE EALQGLNGST IGKQAVRLSW
201: GRSPASKQSR GDSGHRRNGM YYGTPFYGGY GYASPLPHPN MYAAAYGAYP YYGNQQLVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.