Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 88.97 | 97.89 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 96.4 | 96.4 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 56.35 | 90.73 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 98.08 | 89.69 |
| EES05289 | Sorghum | plastid | 87.77 | 84.14 |
| Zm00001d050838_P001 | Maize | plastid | 84.65 | 82.09 |
| TraesCS2D01G315400.2 | Wheat | plastid | 82.97 | 81.6 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 84.89 | 74.68 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 56.59 | 69.01 |
| GSMUA_Achr10P... | Banana | nucleus | 49.88 | 66.24 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 49.4 | 65.81 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 20.86 | 59.18 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 56.12 | 58.06 |
| Bra027446.1-P | Field mustard | cytosol | 44.36 | 57.81 |
| KRH61258 | Soybean | nucleus | 55.4 | 56.48 |
| KRH05723 | Soybean | nucleus | 55.64 | 56.17 |
| PGSC0003DMT400020621 | Potato | nucleus | 53.0 | 55.81 |
| KRH51956 | Soybean | nucleus | 53.48 | 54.26 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 54.2 | 54.07 |
| KRH15315 | Soybean | nucleus | 54.92 | 53.88 |
| Solyc04g079310.2.1 | Tomato | nucleus | 54.68 | 50.55 |
| CDY06734 | Canola | mitochondrion | 36.45 | 49.84 |
| AT1G47500.1 | Thale cress | nucleus | 51.8 | 49.77 |
| CDY52067 | Canola | nucleus | 49.4 | 49.16 |
| Solyc01g108500.2.1 | Tomato | nucleus | 48.68 | 49.15 |
| CDX95176 | Canola | nucleus | 49.16 | 48.93 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 48.2 | 48.55 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 45.32 | 48.46 |
| AT1G47490.1 | Thale cress | nucleus | 50.12 | 48.38 |
| PGSC0003DMT400066648 | Potato | nucleus | 48.68 | 48.33 |
| KRH71168 | Soybean | nucleus | 48.68 | 47.1 |
| KRH50251 | Soybean | nucleus | 48.44 | 46.87 |
| CDY16528 | Canola | nucleus | 47.0 | 46.23 |
| CDY28101 | Canola | nucleus | 47.48 | 46.15 |
| CDY32840 | Canola | nucleus | 46.52 | 46.08 |
| CDY29341 | Canola | nucleus | 45.8 | 45.58 |
| CDY50959 | Canola | nucleus | 47.0 | 45.58 |
| CDY68866 | Canola | nucleus | 44.84 | 45.06 |
| Solyc10g050860.1.1 | Tomato | nucleus | 46.04 | 44.86 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 46.52 | 44.5 |
| CDY22988 | Canola | nucleus | 44.6 | 44.29 |
| TraesCS6D01G081700.2 | Wheat | plastid | 43.41 | 44.15 |
| Bra040663.1-P | Field mustard | nucleus | 39.33 | 44.09 |
| CDX92304 | Canola | nucleus | 44.6 | 43.87 |
| Bra022389.1-P | Field mustard | nucleus | 44.6 | 43.66 |
| CDX99265 | Canola | nucleus | 44.36 | 43.63 |
| AT3G19130.1 | Thale cress | nucleus | 45.32 | 43.45 |
| CDX82310 | Canola | nucleus | 42.93 | 43.45 |
| Bra001735.1-P | Field mustard | nucleus | 42.93 | 43.45 |
| CDX95462 | Canola | nucleus | 44.36 | 42.63 |
| CDY18570 | Canola | nucleus | 44.12 | 42.4 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 45.32 | 41.36 |
| AT1G49600.3 | Thale cress | nucleus | 43.88 | 40.67 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 34.53 | 40.45 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 44.6 | 40.09 |
| Bra037538.1-P | Field mustard | nucleus | 37.89 | 39.21 |
| Bra014216.1-P | Field mustard | nucleus | 41.01 | 29.9 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 24.46 | 23.94 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 25.18 | 23.49 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 23.26 | 21.6 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 9.83 | 16.47 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 14.15 | 16.03 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 15.35 | 14.38 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 20.86 | 13.1 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 19.9 | 13.01 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 19.9 | 12.75 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 18.94 | 12.1 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 19.42 | 8.35 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 18.47 | 8.05 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 19.18 | 7.8 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G184600.1 | EnsemblPlantsGene:TraesCS6D01G184600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF7 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | MapMan:16.9.4 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:234420655..234427914
Molecular Weight (calculated)
45039.7 Da
IEP (calculated)
8.071
GRAVY (calculated)
-0.517
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMAAATTDA PVAAAPHPHP HAHGPQVPHG HGHPHPHHHM PQPRWVVLPY PPPPPMVAAP PPPTPQYVKH FAPQASVTPP PPSAGSGGNG GDENRTIWVG
101: DLQYWMDENY LHSCFGPSGE VVTIKVIRNR HSGVSEGYGF VEFCSHASAE KALQNFAGHV MPTTDRAFKL NWASYSVGEK RSELASDHSI FVGDLAVDVT
201: DDMLMELFAN KYRSVKGAKV IIDANTGRSR GYGFVRFGDD IDRTHAMTEM NGVYCSTRPI RIGPATPRRT SGDSGTSPPT QSDGDSTNRT VYVGGLDPNI
301: SEDELRKAFV KYGDVASVKI PVGKQCGFVQ FVNRADAEEA LQGLSGSTIG KQAVRLSWGR SPASKQSRGD SGHRRNGMYY GTPFYGGYGY GSPVPHPNVY
401: AAAYGAYPFY GNQQLVS
101: DLQYWMDENY LHSCFGPSGE VVTIKVIRNR HSGVSEGYGF VEFCSHASAE KALQNFAGHV MPTTDRAFKL NWASYSVGEK RSELASDHSI FVGDLAVDVT
201: DDMLMELFAN KYRSVKGAKV IIDANTGRSR GYGFVRFGDD IDRTHAMTEM NGVYCSTRPI RIGPATPRRT SGDSGTSPPT QSDGDSTNRT VYVGGLDPNI
301: SEDELRKAFV KYGDVASVKI PVGKQCGFVQ FVNRADAEEA LQGLSGSTIG KQAVRLSWGR SPASKQSRGD SGHRRNGMYY GTPFYGGYGY GSPVPHPNVY
401: AAAYGAYPFY GNQQLVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.