Factsheet for TraesCS3D01G076800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G076700.1	Wheat	mitochondrion	83.53	46.74
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	91.16	40.68
TraesCS3B01G090800.1	Wheat	mitochondrion	89.96	35.84
EER89984	Sorghum	plastid	59.44	23.45
Os06t0589700-01	Rice	cytosol, extracellular	36.14	22.56
Zm00001d046487_P001	Maize	cytosol	57.43	22.24
TraesCS7D01G287900.1	Wheat	cytosol	51.0	19.91
TraesCS5D01G167000.1	Wheat	nucleus, unclear	51.41	19.66
TraesCS2D01G358000.1	Wheat	cytosol	49.4	18.52
TraesCS4D01G205700.1	Wheat	cytosol	39.36	15.01
TraesCS5D01G250100.1	Wheat	nucleus	17.27	12.57
TraesCS2D01G266400.1	Wheat	nucleus	14.86	10.39
TraesCS4D01G150600.2	Wheat	nucleus	18.47	10.24
TraesCS2D01G176700.1	Wheat	nucleus	16.87	9.86
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	16.47	9.83
TraesCS2D01G227900.5	Wheat	nucleus	17.67	9.48
TraesCS2D01G315400.2	Wheat	plastid	16.06	9.43
TraesCS4D01G288600.1	Wheat	nucleus	16.87	9.19
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	16.06	8.95
TraesCS2D01G472700.1	Wheat	nucleus	15.26	8.72
TraesCS6D01G081700.2	Wheat	plastid	13.65	8.29
TraesCS1D01G142300.1	Wheat	nucleus	8.84	5.98
TraesCS2D01G593700.1	Wheat	nucleus	17.67	4.54
TraesCS2D01G594800.1	Wheat	nucleus	15.66	4.08
TraesCS2D01G593900.1	Wheat	nucleus	16.47	4.0

Protein Annotations

EnsemblPlants:TraesCS3D01G076800.1	EnsemblPlantsGene:TraesCS3D01G076800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	ncoils:Coil
PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
MapMan:17.4.2.5	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:37450879..37451791

Molecular Weight (calculated)

28032.6 Da

IEP (calculated)

9.478

GRAVY (calculated)

-0.352

Length

249 amino acids

Sequence
(BLAST)

001: MFGRYGTILS CKVATHFNGQ SKGYGFVQFA EETSANDAID NLNGKLVNGK QIFVGLFIRR QERQPNINLS NYTNVYVKNF PKEFTHNDLL QEFGPFGTIT
101: SVVIMRDNDG ISKCFGFINY GESECAAKAV KSLNGKMIKD SILYVGRAQK KSEREAELKE NFERARNEKF KKFEGLNLYV KNLDGSINDL NLRGLFEFSG
201: EIGSCKVMVD SQGRSKGYGF VSFTTIEAVH KAIDGMNRKI VCKSHFMLV

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.