Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G160900.1 | Wheat | nucleus | 99.73 | 99.73 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 99.46 | 99.46 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 99.46 | 99.46 |
| EER94133 | Sorghum | nucleus | 86.68 | 89.86 |
| Os10t0457000-01 | Rice | nucleus | 86.41 | 89.58 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 86.14 | 88.8 |
| Zm00001d032807_P001 | Maize | nucleus | 86.41 | 88.58 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 74.18 | 74.59 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 75.54 | 74.53 |
| KRH36396 | Soybean | endoplasmic reticulum | 73.1 | 73.7 |
| KRH27525 | Soybean | nucleus | 72.83 | 73.63 |
| Solyc03g118800.2.1 | Tomato | nucleus | 72.28 | 73.08 |
| PGSC0003DMT400023075 | Potato | nucleus | 71.74 | 72.73 |
| PGSC0003DMT400014744 | Potato | nucleus | 71.47 | 72.25 |
| AT2G18510.1 | Thale cress | nucleus | 67.39 | 68.32 |
| CDY43894 | Canola | nucleus | 66.03 | 66.76 |
| Bra039603.1-P | Field mustard | nucleus | 66.03 | 66.76 |
| CDY59539 | Canola | nucleus | 66.03 | 66.39 |
| CDY66740 | Canola | nucleus | 68.48 | 66.14 |
| Bra037217.1-P | Field mustard | nucleus | 68.21 | 65.88 |
| CDY67617 | Canola | nucleus | 68.21 | 65.88 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 21.2 | 18.31 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 16.3 | 17.54 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 30.71 | 17.02 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 27.99 | 16.14 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 19.57 | 16.04 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 27.99 | 15.82 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 19.02 | 15.66 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 18.75 | 15.51 |
| TraesCS2D01G315400.2 | Wheat | plastid | 17.12 | 14.86 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 17.66 | 14.22 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 16.03 | 14.15 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 17.12 | 13.58 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 16.03 | 13.53 |
| TraesCS6D01G081700.2 | Wheat | plastid | 14.95 | 13.41 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 23.37 | 13.17 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 11.96 | 12.36 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 5.98 | 8.84 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 19.29 | 7.32 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 19.29 | 6.93 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 17.93 | 6.9 |
Protein Annotations
| MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44799 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS1D01G142300 | EnsemblPlants:TraesCS1D01G142300.1 | TIGR:cd12334 | TIGR:cd12335 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:+:197726407..197735652
Molecular Weight (calculated)
40325.4 Da
IEP (calculated)
8.414
GRAVY (calculated)
-0.701
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQDATTYVG NLDPQVSEEL LWELFVQAGP VVNVYVPKDR VTNLHQGYGF VEFRSEEDAD YAIKILNMLK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PEVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YDSFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLAAN NPGSQKHRPH TMFATAPPTQ GLQNGGVGAP VPRPFANGNV PGQMQHVRPP PPPVGQYPPM QMHGQPAWPG PPQNMQQVPP PMQQQLQYRL
301: PGMPPPPQNM MPPPQNMMPP PHHMARPPPP PPNMQAPPMW RPPPPPQQGG GMPPPPMSMP PPPPPPSG
101: ASQDKKSLDV GANLFIGNLD PEVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YDSFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLAAN NPGSQKHRPH TMFATAPPTQ GLQNGGVGAP VPRPFANGNV PGQMQHVRPP PPPVGQYPPM QMHGQPAWPG PPQNMQQVPP PMQQQLQYRL
301: PGMPPPPQNM MPPPQNMMPP PHHMARPPPP PPNMQAPPMW RPPPPPQQGG GMPPPPMSMP PPPPPPSG
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.