Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G599000.1 | Wheat | nucleus | 95.36 | 95.07 |
| TraesCSU01G037200.1 | Wheat | nucleus | 94.12 | 93.83 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 75.67 | 76.78 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 80.82 | 76.49 |
| Os04t0682400-01 | Rice | nucleus | 56.39 | 54.27 |
| KXG27463 | Sorghum | nucleus | 54.43 | 49.07 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 12.27 | 27.93 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 12.68 | 27.39 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 11.75 | 25.5 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 8.76 | 24.85 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 9.48 | 21.1 |
| TraesCS2D01G315400.2 | Wheat | plastid | 8.97 | 20.52 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 7.32 | 19.94 |
| TraesCS6D01G081700.2 | Wheat | plastid | 8.35 | 19.76 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 8.35 | 19.42 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 7.32 | 19.29 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 9.07 | 19.26 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 9.18 | 19.18 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 4.54 | 17.67 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 7.42 | 16.18 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 11.03 | 16.11 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 10.21 | 15.52 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 10.41 | 15.51 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 10.0 | 14.85 |
| Bra039841.1-P | Field mustard | cytosol | 1.55 | 7.04 |
| CDY37229 | Canola | cytosol | 1.55 | 7.04 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR00961 |
| PFscan:PS50102 | PANTHER:PTHR11208 | PANTHER:PTHR11208:SF89 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2D01G593700 | EnsemblPlants:TraesCS2D01G593700.1 | TIGR:cd00590 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:648112354..648115266
Molecular Weight (calculated)
105583.0 Da
IEP (calculated)
4.610
GRAVY (calculated)
-0.332
Length
970 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKSDLADQ LQEDGTSAVA DEYEECSEEE EPFEREFYDD DDDDDDNVGE PETKAADPCE DPLAEEEEAN GEEPCDGATP LEDEDASYDE PFVDELCYEE
101: DSGEQDSYYA EPFTDQLCEV EPCDVEVARE EEFGRKYCPV QAIKKEQNEE EVLKRTLRKG SSHEHKAVPV TDEIELKPFK KRLSVRFATD VSCYTYSTES
201: FGAAKLEKRK ALFDDQDSHL CKRQEHTVSL SQDSVTLKEV DDTNLYVGNL PTSVTSHKLI ELFLPFGRIV RSKVADDRFT GLSQGYGFVK YAEPRSATAA
301: IERMNGRLVD GKTLEVRVAG PPTSVFYPSM QAVSEACSLP SKEVDPCRLY VCNLPLSMDT LKLLEHFLPF GKVTDIKVPR DQATGLSKGY GFVKYSDSHH
401: AAQAITNLNG FLVEGKKIDV RVAEVSSTRT IKEIDMANLY VCNIPASIDT DKLVALFSPF GKITHARVAA DQGYGFVKFA DSQCAAEAIA LMNGSLVEGE
501: TLIVRVAGLS PLASSSVVQG SPIPSLEMKK SRLYVTNLPR SMNADKLVEL FMPFGKISKV VINLEYSLVY YADSASVTTA VEHMDGYLIG GKSLVVRRSD
601: SCPTAAAGHA PLSSQSAGGK PTREIDMANL YVGGIPPTVT DNQLVELFRP FGQIVQSRMF LGYGMVRYSD PSSAAAAIDR MDGYQIGAST LAVRVAGLPN
701: IMPRADCLTA PQAPPGNEQK EVDLTNLYVG HLPLYITTER LTEIFLPCGQ ITQAKVVVDR YTGVSKGFGF VKFADTYAAA AALSYMNGYL LEGHILAVRI
801: ANVHPSDMGS YMARLYSQFK VPDPSTMAVG VPTSSYWPPC YSAESAYAEN YRGQGTDAAA SQTSQLPESV SASSSFAAER DWSPVSSHVA DSSQQQPSAG
901: WAGPPGFEPL HAHAAVSPPP PVVPWAGPPG FEPHSIPKKK DGATATKPSQ PCSKVHLAES GGSQKRRSIV
101: DSGEQDSYYA EPFTDQLCEV EPCDVEVARE EEFGRKYCPV QAIKKEQNEE EVLKRTLRKG SSHEHKAVPV TDEIELKPFK KRLSVRFATD VSCYTYSTES
201: FGAAKLEKRK ALFDDQDSHL CKRQEHTVSL SQDSVTLKEV DDTNLYVGNL PTSVTSHKLI ELFLPFGRIV RSKVADDRFT GLSQGYGFVK YAEPRSATAA
301: IERMNGRLVD GKTLEVRVAG PPTSVFYPSM QAVSEACSLP SKEVDPCRLY VCNLPLSMDT LKLLEHFLPF GKVTDIKVPR DQATGLSKGY GFVKYSDSHH
401: AAQAITNLNG FLVEGKKIDV RVAEVSSTRT IKEIDMANLY VCNIPASIDT DKLVALFSPF GKITHARVAA DQGYGFVKFA DSQCAAEAIA LMNGSLVEGE
501: TLIVRVAGLS PLASSSVVQG SPIPSLEMKK SRLYVTNLPR SMNADKLVEL FMPFGKISKV VINLEYSLVY YADSASVTTA VEHMDGYLIG GKSLVVRRSD
601: SCPTAAAGHA PLSSQSAGGK PTREIDMANL YVGGIPPTVT DNQLVELFRP FGQIVQSRMF LGYGMVRYSD PSSAAAAIDR MDGYQIGAST LAVRVAGLPN
701: IMPRADCLTA PQAPPGNEQK EVDLTNLYVG HLPLYITTER LTEIFLPCGQ ITQAKVVVDR YTGVSKGFGF VKFADTYAAA AALSYMNGYL LEGHILAVRI
801: ANVHPSDMGS YMARLYSQFK VPDPSTMAVG VPTSSYWPPC YSAESAYAEN YRGQGTDAAA SQTSQLPESV SASSSFAAER DWSPVSSHVA DSSQQQPSAG
901: WAGPPGFEPL HAHAAVSPPP PVVPWAGPPG FEPHSIPKKK DGATATKPSQ PCSKVHLAES GGSQKRRSIV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.