Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G599000.1 | Wheat | nucleus | 94.45 | 94.45 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 93.83 | 94.12 |
| TraesCSU01G036300.1 | Wheat | nucleus | 74.41 | 75.89 |
| TraesCSU01G037000.1 | Wheat | plastid | 81.91 | 71.03 |
| Os04t0682400-01 | Rice | nucleus | 55.91 | 53.97 |
| KXG27463 | Sorghum | nucleus | 54.27 | 49.07 |
| Bra039841.1-P | Field mustard | cytosol | 1.44 | 6.57 |
| CDY37229 | Canola | cytosol | 1.44 | 6.57 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR00961 |
| PFscan:PS50102 | PANTHER:PTHR43938 | PANTHER:PTHR43938:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCSU01G037200 | EnsemblPlants:TraesCSU01G037200.1 | TIGR:cd00590 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:31320839..31323760
Molecular Weight (calculated)
105710.0 Da
IEP (calculated)
4.624
GRAVY (calculated)
-0.305
Length
973 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKSDLVDQ LQEDGMSAVA AEYEEGIEEE EEEEPFEREF YDDDDDDASN EGGPETQAVD PCEDPLAEES EANGAEPCDG ATPLEDEDAS YDEPFVDELC
101: YEEDSGEQDS YYAEPFTDQL CEVEPCDVEV AREKEFGRKY SPVQAIKKEQ NEEEVLKQAL GKGSSHEHKV VPVTDEIELK PFKKRLSVRF ATDVSCYTYS
201: TESFGAARLE KRKAQFDDQD SHLCKRQEHT VSLPQDGVTL KEVDDTNLYV GNLPTSVTSH KLIELFLPFG RIVRSKVADD RFTGVSQGYG FVKYAEPRSA
301: TTAIERMNGR LVDGKTLEVR VAAVPPSVSY PSMQAVSETC SLPSKEVDPC RLYVCNLPLS MDTLKLLEHF LPFGKVTDIK VPRDQATGLS KGYGFVKYSD
401: SHHAAQAITH LNGFLVEGKK IDVRVAEVSS TRTIKEIDMA NLYVCNIPAS IDTDKLVALF SPFGKITHAR VAADQGYGFV KFANSQCAAE AIALMNGSLV
501: EGETLIVRVA GLSPLASSSV VQGSPIPSPE MKKSRLYVTN LPRSMNADKL VELFVPFGKI SKVVINLEYS LVYYADAASV ATAVEHMDGY LIGGKSLVVR
601: RSDSCPTAAA AHAPLSSQSA GGTPTREIDM ANLYVGGFPP TVTGDQLVEL FRPFGRIVQS RMFHGYGMVR YSDPLSAAAA IDEMDGYQIG ASTLVVRVAG
701: LPNLMPRVDC LTALQVPPGN EQKEVDLTNL YVGHLPLYIT TERLTEIFLP CGQITQAKVV VDRHTGVSKG FGFVKFADTY AAAAALSYMN GYPLEGHILA
801: VRIANVHPND MGSYMVRLYS QFKVPDPSTM AVGVPTSSYW PPCYSAESAY AEDYRGQGTD AAASQTSQLP ESVSASSSFA AERDWSPVSS HVADSSQQQP
901: SAGWAGPPGF EPLHAHAAVS PPPPVVPWAG PPGFEPHSIP KKEDGATATK PSQPCSKVHL AQSGGSQKRR SIV
101: YEEDSGEQDS YYAEPFTDQL CEVEPCDVEV AREKEFGRKY SPVQAIKKEQ NEEEVLKQAL GKGSSHEHKV VPVTDEIELK PFKKRLSVRF ATDVSCYTYS
201: TESFGAARLE KRKAQFDDQD SHLCKRQEHT VSLPQDGVTL KEVDDTNLYV GNLPTSVTSH KLIELFLPFG RIVRSKVADD RFTGVSQGYG FVKYAEPRSA
301: TTAIERMNGR LVDGKTLEVR VAAVPPSVSY PSMQAVSETC SLPSKEVDPC RLYVCNLPLS MDTLKLLEHF LPFGKVTDIK VPRDQATGLS KGYGFVKYSD
401: SHHAAQAITH LNGFLVEGKK IDVRVAEVSS TRTIKEIDMA NLYVCNIPAS IDTDKLVALF SPFGKITHAR VAADQGYGFV KFANSQCAAE AIALMNGSLV
501: EGETLIVRVA GLSPLASSSV VQGSPIPSPE MKKSRLYVTN LPRSMNADKL VELFVPFGKI SKVVINLEYS LVYYADAASV ATAVEHMDGY LIGGKSLVVR
601: RSDSCPTAAA AHAPLSSQSA GGTPTREIDM ANLYVGGFPP TVTGDQLVEL FRPFGRIVQS RMFHGYGMVR YSDPLSAAAA IDEMDGYQIG ASTLVVRVAG
701: LPNLMPRVDC LTALQVPPGN EQKEVDLTNL YVGHLPLYIT TERLTEIFLP CGQITQAKVV VDRHTGVSKG FGFVKFADTY AAAAALSYMN GYPLEGHILA
801: VRIANVHPND MGSYMVRLYS QFKVPDPSTM AVGVPTSSYW PPCYSAESAY AEDYRGQGTD AAASQTSQLP ESVSASSSFA AERDWSPVSS HVADSSQQQP
901: SAGWAGPPGF EPLHAHAAVS PPPPVVPWAG PPGFEPHSIP KKEDGATATK PSQPCSKVHL AQSGGSQKRR SIV
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.