Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039841.1-P | Field mustard | cytosol | 99.53 | 99.53 |
| CDX79295 | Canola | cytosol, plastid | 32.86 | 70.0 |
| CDY08990 | Canola | cytosol | 31.92 | 68.69 |
| CDY67364 | Canola | nucleus | 71.36 | 51.88 |
| CDX79296 | Canola | plastid | 28.64 | 33.33 |
| CDX71223 | Canola | cytosol | 75.12 | 25.08 |
| CDX91689 | Canola | nucleus | 35.68 | 24.92 |
| CDX89664 | Canola | cytosol | 69.48 | 24.1 |
| CDY36634 | Canola | nucleus | 72.77 | 23.88 |
| CDY62723 | Canola | cytosol | 69.01 | 23.82 |
| CDY51957 | Canola | cytosol, plastid | 69.01 | 23.75 |
| CDX75397 | Canola | nucleus, plastid | 68.54 | 23.7 |
| CDX69025 | Canola | nucleus, plastid | 66.2 | 23.08 |
| CDY54068 | Canola | cytosol | 70.42 | 22.97 |
| CDY51045 | Canola | cytosol | 69.48 | 22.66 |
| CDX89562 | Canola | nucleus | 52.58 | 17.36 |
| CDY38939 | Canola | nucleus | 51.64 | 17.08 |
| CDY67921 | Canola | nucleus | 51.64 | 17.05 |
| CDY46079 | Canola | nucleus | 46.95 | 15.9 |
| CDX92325 | Canola | nucleus | 21.6 | 14.29 |
| CDX72826 | Canola | plastid | 36.15 | 11.26 |
| CDX96344 | Canola | plastid | 36.15 | 11.26 |
| CDY37935 | Canola | nucleus | 33.33 | 10.91 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.39 | 10.65 |
| CDY36684 | Canola | plastid | 32.86 | 10.53 |
| CDY41472 | Canola | cytosol, plastid | 31.46 | 10.45 |
| CDY03685 | Canola | nucleus | 29.58 | 9.8 |
| CDY59539 | Canola | nucleus | 10.8 | 6.28 |
| CDY67617 | Canola | nucleus | 10.8 | 6.04 |
| CDY66740 | Canola | nucleus | 10.8 | 6.04 |
| CDY43894 | Canola | nucleus | 9.86 | 5.77 |
| CDX89287 | Canola | nucleus | 9.86 | 5.07 |
| CDY14290 | Canola | nucleus | 9.86 | 5.04 |
| CDY66423 | Canola | nucleus | 9.86 | 4.93 |
| CDY46671 | Canola | nucleus | 9.86 | 4.9 |
| CDY29263 | Canola | nucleus | 9.39 | 4.77 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 9.39 | 4.69 |
| CDY06734 | Canola | mitochondrion | 6.57 | 4.59 |
| CDX92537 | Canola | nucleus | 8.92 | 4.53 |
| CDY13992 | Canola | nucleus | 8.92 | 4.53 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 8.92 | 4.42 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 8.92 | 4.42 |
| CDY34835 | Canola | nucleus | 7.98 | 4.33 |
| CDY19874 | Canola | nucleus | 8.45 | 4.3 |
| CDY17286 | Canola | nucleus | 7.98 | 4.2 |
| CDY52067 | Canola | nucleus | 7.04 | 3.58 |
| CDX95176 | Canola | nucleus | 7.04 | 3.58 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 8.45 | 3.55 |
| CDY63384 | Canola | mitochondrion, nucleus | 5.63 | 2.87 |
| CDY56198 | Canola | cytosol | 6.1 | 2.66 |
| CDX81822 | Canola | mitochondrion, nucleus | 6.57 | 2.57 |
| CDY30168 | Canola | cytosol | 6.1 | 2.42 |
| CDY61476 | Canola | nucleus | 4.69 | 2.39 |
| CDY51403 | Canola | nucleus | 4.69 | 2.38 |
| CDY02486 | Canola | nucleus | 4.69 | 2.38 |
| CDY33092 | Canola | nucleus | 4.69 | 2.35 |
| CDY18570 | Canola | nucleus | 4.69 | 2.3 |
| CDX95462 | Canola | nucleus | 4.69 | 2.3 |
| CDY22988 | Canola | nucleus | 4.23 | 2.14 |
| CDY28101 | Canola | nucleus | 4.23 | 2.1 |
| CDY50959 | Canola | nucleus | 4.23 | 2.09 |
| CDY32840 | Canola | nucleus | 3.76 | 1.9 |
| CDY16528 | Canola | nucleus | 3.76 | 1.89 |
| CDY68866 | Canola | nucleus | 3.29 | 1.69 |
| CDY29341 | Canola | nucleus | 3.29 | 1.67 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 7.04 | 1.55 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 7.04 | 1.48 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 6.57 | 1.46 |
| CDX82310 | Canola | nucleus | 2.82 | 1.46 |
| TraesCS2B01G599000.1 | Wheat | nucleus | 6.57 | 1.44 |
| TraesCSU01G037200.1 | Wheat | nucleus | 6.57 | 1.44 |
| CDX92304 | Canola | nucleus | 2.82 | 1.42 |
| CDX99265 | Canola | nucleus | 2.82 | 1.42 |
| Os04t0682400-01 | Rice | nucleus | 6.57 | 1.39 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 6.57 | 1.37 |
| TraesCSU01G036300.1 | Wheat | nucleus | 6.1 | 1.36 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 6.1 | 1.36 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 6.57 | 1.34 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 6.1 | 1.22 |
| KXG27463 | Sorghum | nucleus | 6.1 | 1.21 |
| TraesCSU01G037000.1 | Wheat | plastid | 6.1 | 1.16 |
| CDY57754 | Canola | nucleus | 0.47 | 0.47 |
| CDY72408 | Canola | plastid | 0.0 | 0.0 |
| CDY67365 | Canola | plastid | 0.0 | 0.0 |
| CDY33264 | Canola | mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY37229 | EnsemblPlantsGene:GSBRNA2T00063716001 | Gene3D:1.10.1900.10 | GO:A0A078HIP9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR002004 | InterPro:PABP-dom | InterPro:PABP_HYD | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF349 | PFAM:PF00658 | PFscan:PS51309 | ProteinID:CDY37229 | ProteinID:CDY37229.1 | SEG:seg |
| SMART:SM00517 | SUPFAM:SSF63570 | UniParc:UPI0004EF32FD | UniProt:A0A078HIP9 | MapMan:35.1 | : |
Description
BnaA09g08500DBnaA09g08500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIP9]
Coordinates
chrLK032395:+:259472..260404
Molecular Weight (calculated)
23113.2 Da
IEP (calculated)
6.231
GRAVY (calculated)
-0.332
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMYPPGGPL VGQQVFYGQA PPTTIPPQPG YGYQQQQMVP GMRPGGAPMH NFFMPMIQQG QQRPGGRPSG GIQQQQQQVS MMHQQQHLVL FLLNHSLCSR
101: GEGRMFRYPQ GRGSGGGPTP DVPGMLPYEM PLRDPVLSQH MLGENLYPLV EQLEAESAAK VTGMLLEMDQ TEVLHLLESP EALKAKVVEA MDVLRSVAAG
201: GAAEQLASLN LAS
101: GEGRMFRYPQ GRGSGGGPTP DVPGMLPYEM PLRDPVLSQH MLGENLYPLV EQLEAESAAK VTGMLLEMDQ TEVLHLLESP EALKAKVVEA MDVLRSVAAG
201: GAAEQLASLN LAS
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.