CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G594800.1	Wheat	nucleus	50.65	57.01
TraesCSU01G036300.1	Wheat	nucleus	50.19	56.6
TraesCS2B01G601400.1	Wheat	nucleus	50.37	56.58
TraesCS2D01G593700.1	Wheat	nucleus	49.07	54.43
TraesCSU01G037200.1	Wheat	nucleus	49.07	54.27
TraesCS2B01G599000.1	Wheat	nucleus	48.98	54.16
Os04t0682400-01	Rice	nucleus	49.91	53.27
HORVU2Hr1G123110.1	Barley	nucleus, plastid	50.56	51.18
TraesCS2D01G593900.1	Wheat	nucleus	48.61	51.02
HORVU2Hr1G122920.2	Barley	nucleus	47.96	50.99
TraesCS2B01G598800.1	Wheat	nucleus	48.98	50.33
TraesCSU01G037000.1	Wheat	plastid	48.88	46.88
EES08860	Sorghum	nucleus	10.87	26.53
EES15356	Sorghum	nucleus	10.69	25.73
OQU91463	Sorghum	nucleus	8.55	22.49
EER95718	Sorghum	nucleus	7.25	21.55
KXG35789	Sorghum	nucleus	8.74	21.46
KXG27152	Sorghum	nucleus	8.64	21.43
EES10898	Sorghum	nucleus	8.36	21.28
KXG24662	Sorghum	nucleus	8.92	21.05
KXG36337	Sorghum	nucleus	9.29	20.96
EER95414	Sorghum	nucleus	7.99	20.72
EES05289	Sorghum	plastid	7.71	19.08
EER94133	Sorghum	nucleus	5.48	16.62
KXG35258	Sorghum	cytosol	8.83	14.48
EES12460	Sorghum	plastid	8.92	14.46
EER89984	Sorghum	plastid	8.18	13.95
KXG40160	Sorghum	nucleus	8.46	12.62
Bra039841.1-P	Field mustard	cytosol	1.21	6.1
CDY37229	Canola	cytosol	1.21	6.1

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8076483	UniProt:C5YAM7	ncoils:Coil	ProteinID:EES13121.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KXG27463	ProteinID:KXG27463	ProteinID:KXG27463.1	ProteinID:KXG27464.1	ProteinID:KXG27465.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR11208	PANTHER:PTHR11208:SF89	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	EnsemblPlantsGene:SORBI_3006G271600	SUPFAM:SSF54928	UniParc:UPI0001A87605
RefSeq:XP_002448793.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60337825..60343863

Molecular Weight (calculated)

117077.0 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.325

Length

1076 amino acids

Sequence
(BLAST)

0001: MGRSGLTGQL QESQSDDMSA AAGYEEGSEE EEPFEVEFYD DDDDELDVEQ CNGTALPENK DASDKEPFEV DLCSDKGSDK ADSSHSEHYV NLVPDGHNTC
0101: RNQLYVAEPC QGLMIDKGEF VEKKSNYVQP SEQEQNKKEL KQVLRHNNSA QKEVSVAKEK ETMPFKKRLS VKFAADVSCY TYSTESFAAA TVEKRKVQSD
0201: DQDKHLCKRQ ELSFSSAHDE GKLKEGNGTN LFVGNLPPSL ASHKLIELFL PFGRIVKSRV VDDCFTGSSK GYGFVQYSDP RYAAEAIKHM NGRMVEGRML
0301: EVRLAGAPSS GSTKEMDMSK LYVCNLPLLL HEDKLHDLFV PYGQVTSVKV MRDHATGLSK GYGFVRYSDP QHAAHAIFQL NGHLIEGKKM EVRVAAVSSS
0401: GSNTSVQAIS ETDHQLTKEV DMSNVYVQNL PLLMNTDKLL NLFLPYGKVT SAKVAMDYTS GISKGYGFVK FSDPHDAAHA VIELNGCLVE GRKILVRVRP
0501: PSSPVESHAN NRTLKEIDMS NLYVCNIPSS MNKAKLVELF LPFGRITHAM VVEQSNNSSK GYGFVKFADS HCAAEAVAMM NGALIEGETI SVRVAGLSPS
0601: VSSSVSQHSP HSEINASPEI NNCRLYVTNL PQTMSADKLV SLFMPFGQID RVVMYAEYSF VLYADINSAA KALKHMDGYL IEGKRLVVKG SEPLPANAAQ
0701: SACSQSGSKL VKEIDMANLY VGRVPSAVTC EQLVQIFCLY GEIVQAKKFD AGYGMIRYAN ASSAAAAIDH LDGYQIGGST LVVRVAGLPA ESDVATFART
0801: PQTPGNEHRQ IDMTNLYVGY LPPYVTTDKL IELFLPCGQI TQAKVVVDKF TGVSKGFGFV RFADAYSAAT AITHMNGYPL DGHMLAVRTA GVQPSDMASY
0901: MAHFYSYFTS TDPSRMAVGI PTSDWSYYYG QSAYNPYYYA ESAYTTPAVH QGQGAESAAT AAGKTSQLEG LSGPEPVGSV AERDGSSVSN PAASDGSRLD
1001: VWAGPPGFES HAVTKKDTTT MNTSQAWAVA KKEVSMMNTS QACSKVRMVQ SGQSEGWAGP PGFEPHAIAK KDACTI

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.