CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026346_P002	Maize	extracellular	93.09	94.39
Zm00001d002244_P003	Maize	nucleus	95.39	92.41
Os04t0625800-01	Rice	nucleus	86.18	88.0
TraesCS2D01G472700.1	Wheat	nucleus	82.95	82.57
TraesCS2B01G495700.1	Wheat	nucleus	82.72	82.34
TraesCS2A01G473000.1	Wheat	nucleus	82.72	82.34
KXG24662	Sorghum	nucleus	79.95	76.1
KRH20867	Soybean	nucleus	61.75	65.53
OQU91463	Sorghum	nucleus	60.6	64.3
KRH11417	Soybean	nucleus	60.83	64.23
HORVU2Hr1G106810.1	Barley	nucleus	67.97	63.85
KRH51075	Soybean	endoplasmic reticulum	58.29	63.73
KRH02082	Soybean	nucleus	58.53	63.18
Solyc03g031720.2.1	Tomato	nucleus	55.76	59.75
AT1G11650.2	Thale cress	nucleus	55.07	59.01
CDY34835	Canola	nucleus	53.23	58.78
Solyc10g005260.2.1	Tomato	nucleus	55.53	58.64
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	55.76	58.6
PGSC0003DMT400013036	Potato	nucleus	53.92	58.5
PGSC0003DMT400029379	Potato	nucleus	53.92	58.5
Bra031774.1-P	Field mustard	nucleus	52.3	57.61
PGSC0003DMT400042504	Potato	nucleus	54.61	57.38
KXG36337	Sorghum	nucleus	55.99	50.94
EER95414	Sorghum	nucleus	47.23	49.4
KXG35789	Sorghum	nucleus	47.7	47.26
CDY34639	Canola	nucleus, plastid, vacuole	53.0	45.36
EES10898	Sorghum	nucleus	43.32	44.44
EES05289	Sorghum	plastid	43.32	43.22
EER95718	Sorghum	nucleus	34.33	41.16
EES15356	Sorghum	nucleus	25.35	24.61
EES08860	Sorghum	nucleus	22.58	22.22
EER94133	Sorghum	nucleus	13.59	16.62
KXG35258	Sorghum	cytosol	22.12	14.63
EES12460	Sorghum	plastid	22.35	14.61
EER89984	Sorghum	plastid	20.51	14.1
KXG40160	Sorghum	nucleus	18.2	10.96
KXG27463	Sorghum	nucleus	21.43	8.64
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.61	5.6

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1B6PNA9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG27152	ProteinID:KXG27152	ProteinID:KXG27152.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF3	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G222400	SUPFAM:SSF54928	UniParc:UPI00081AD211	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:56880753..56885006

Molecular Weight (calculated)

46982.2 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.622

Length

434 amino acids

Sequence
(BLAST)

001: MMQQPPPPQP QPGMAPPPPT QAGGGQPPQW GGIPPPMTQQ YGAPPPQQPP AMWGQPPPQA HYGQAPPPQP YYAAPPAPAP APAAPAAADE VRTLWIGDLQ
101: YWMDESYVLG CFLSTGEVQN VKLIRDKNSG QLQGYGFVEF TSRAAAERVL QTYNGQMMPN VELTFRLNWA SAGEKRDDTP DYTIFVGDLA ADVTDYLLQE
201: TFRVHYPSVK GAKVVTDKLT MRTKGYGFVK FGDPTEQARA MTEMNGMPCS SRPMRIGPAA SRKNTGGVVQ ERVPNSQGAQ SENDPNNTTI FVGGLDPNVT
301: EDTLKQVFSP YGEVVHVKIP VGKRCGFVQF VTRPSAEQAL LMLQGALIGA QNVRLSWGRS LSNKQAQPQQ ESNQWGAAAA AGAGGYYGGY GQGYEAYGSG
401: YAQPQDPNMY GYGAYAGYPN YQQQQAAQQP QQQQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.