Factsheet for Solyc02g080420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042504	Potato	nucleus	97.34	97.34
Solyc10g005260.2.1	Tomato	nucleus	81.84	82.24
Solyc03g031720.2.1	Tomato	nucleus	80.39	81.98
KRH51075	Soybean	endoplasmic reticulum	64.41	67.0
KRH02082	Soybean	nucleus	63.68	65.42
KRH20867	Soybean	nucleus	64.16	64.79
Solyc07g064510.2.1	Tomato	plastid	63.2	63.66
KRH11417	Soybean	nucleus	63.2	63.5
CDY34835	Canola	nucleus	58.35	61.32
Bra031774.1-P	Field mustard	nucleus	57.38	60.15
TraesCS7A01G295700.3	Wheat	plastid	44.79	59.49
AT1G11650.2	Thale cress	nucleus	58.11	59.26
Os04t0625800-01	Rice	nucleus	58.6	56.94
Os08t0190200-00	Rice	nucleus	60.53	56.56
TraesCS6D01G081700.2	Wheat	plastid	55.93	56.34
TraesCS6A01G100800.1	Wheat	nucleus	55.93	56.34
TraesCS6B01G128900.2	Wheat	plastid	56.42	55.88
KXG27152	Sorghum	nucleus	58.6	55.76
TraesCS7B01G199000.1	Wheat	nucleus, plastid	55.93	54.87
Zm00001d026346_P002	Maize	extracellular	56.17	54.21
KXG24662	Sorghum	nucleus	59.81	54.17
Zm00001d049416_P001	Maize	extracellular, nucleus	59.56	53.95
TraesCS2D01G472700.1	Wheat	nucleus	56.9	53.9
TraesCS2B01G495700.1	Wheat	nucleus	56.9	53.9
TraesCS2A01G473000.1	Wheat	nucleus	56.66	53.67
Zm00001d002244_P003	Maize	nucleus	58.11	53.57
Solyc01g108500.2.1	Tomato	nucleus	49.15	49.15
Solyc10g050860.1.1	Tomato	nucleus	49.64	47.9
CDY34639	Canola	nucleus, plastid, vacuole	58.6	47.73
HORVU7Hr1G066510.3	Barley	plastid	50.12	47.37
Solyc11g065880.1.1	Tomato	nucleus	47.7	47.24
HORVU2Hr1G106810.1	Barley	nucleus	51.82	46.32
Solyc04g079310.2.1	Tomato	nucleus	49.64	45.45
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	24.46	25.19
Solyc06g063000.2.1	Tomato	nucleus	25.42	25.18
Solyc07g042180.2.1	Tomato	nucleus	23.97	24.87
Solyc03g122180.2.1	Tomato	nucleus	24.94	24.7
Solyc03g118800.2.1	Tomato	nucleus	15.5	17.58
Solyc01g107870.2.1	Tomato	extracellular	24.46	15.71
Solyc12g088720.1.1	Tomato	plastid	24.46	15.17
Solyc09g008620.1.1	Tomato	cytosol	20.34	13.88
Solyc10g085750.1.1	Tomato	nucleus	20.58	13.67
Solyc06g062680.1.1	Tomato	cytosol	12.83	9.98
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.42	8.0

Protein Annotations

EnsemblPlants:Solyc02g080420.2.1	EnsemblPlantsGene:Solyc02g080420.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002769024	UniProt:K4B9R3	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr2:+:44644184..44650382

Molecular Weight (calculated)

45745.0 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.761

Length

413 amino acids

Sequence
(BLAST)

001: MQPANSMVPP PQYQQTQQWM AQPPPQYQVA PPQQSGYYYQ QPQQQGGVPP PQQQQLQYNA SGLAATAGSV QPTSADEIRS LWIGDLQFWM DEQYLLNCFA
101: QTGEVTSAKV IRNKQSGQSE GYGFIEFISH AAAERNLQAY NGTLMPNIEQ NFRLNWASLG SGEKRSDNGP EYTIFVGDLA ADVSDYMLQE TFRANYPSVK
201: GAKVVTDKAT GRTKGYGFVK FGDESEQLRA MTEMNGQFCS TRPMRIGPAA NKKSMGGQSQ ASYQSSPGTQ NEDDPSNTTI FVGNLDSNIT DEHLRQIFGH
301: YGQLLHVKIP VGKRCGFIQF ADRSCAEEAL RVLNGTQLGG QSIRLSWGRS PANKQQPQLD PNQYAGYYGY TAGYEGYGYA PPAQDPNQYY AGYAGYGNYA
401: QPQQQQQVLQ HPQ

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.