Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 94.02 | 94.02 |
| Solyc07g042180.2.1 | Tomato | nucleus | 77.56 | 78.14 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 78.3 | 74.41 |
| Solyc06g063000.2.1 | Tomato | nucleus | 74.31 | 71.46 |
| KRH19347 | Soybean | mitochondrion, nucleus | 71.57 | 70.0 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 73.57 | 69.74 |
| KRH02581 | Soybean | mitochondrion | 71.32 | 69.25 |
| GSMUA_Achr10P... | Banana | mitochondrion | 72.82 | 68.71 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 73.07 | 67.51 |
| Solyc03g122180.2.1 | Tomato | nucleus | 69.33 | 66.67 |
| Zm00001d026528_P001 | Maize | plastid | 35.16 | 64.09 |
| GSMUA_Achr11P... | Banana | nucleus | 70.82 | 63.96 |
| Os07t0615400-01 | Rice | nucleus | 67.08 | 63.0 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 64.84 | 61.03 |
| Os11t0620100-01 | Rice | nucleus | 67.08 | 61.0 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 64.84 | 60.61 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 64.59 | 60.51 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 67.08 | 60.45 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 66.83 | 59.69 |
| Zm00001d048824_P004 | Maize | nucleus | 65.84 | 59.06 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 65.59 | 58.71 |
| EES08860 | Sorghum | nucleus | 64.34 | 58.5 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 63.84 | 58.31 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 72.07 | 58.27 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 65.09 | 52.52 |
| Zm00001d026522_P001 | Maize | nucleus | 26.43 | 43.44 |
| Solyc07g064510.2.1 | Tomato | plastid | 26.68 | 26.1 |
| Solyc01g108500.2.1 | Tomato | nucleus | 26.68 | 25.91 |
| Solyc03g031720.2.1 | Tomato | nucleus | 25.69 | 25.43 |
| Solyc10g005260.2.1 | Tomato | nucleus | 25.94 | 25.3 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 25.19 | 24.46 |
| Solyc10g050860.1.1 | Tomato | nucleus | 25.44 | 23.83 |
| Solyc11g065880.1.1 | Tomato | nucleus | 24.69 | 23.74 |
| Solyc04g079310.2.1 | Tomato | nucleus | 26.18 | 23.28 |
| Solyc03g118800.2.1 | Tomato | nucleus | 16.96 | 18.68 |
| Solyc01g107870.2.1 | Tomato | extracellular | 23.69 | 14.77 |
| Solyc12g088720.1.1 | Tomato | plastid | 24.44 | 14.71 |
| Solyc10g085750.1.1 | Tomato | nucleus | 21.95 | 14.15 |
| Solyc09g008620.1.1 | Tomato | cytosol | 20.95 | 13.88 |
| Solyc06g062680.1.1 | Tomato | cytosol | 11.22 | 8.47 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4DC11 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44160 | PANTHER:PTHR44160:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc12g009230.1 | EnsemblPlants:Solyc12g009230.1.1 | UniParc:UPI0002769837 | SEG:seg |
Description
No Description!
Coordinates
chr12:-:2510370..2516230
Molecular Weight (calculated)
43849.9 Da
IEP (calculated)
8.447
GRAVY (calculated)
-0.339
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQQRLKQQ QGLMQQSLYH PGLIASPQIE PILSGNLPPG FDSTTCRSVY VGNISSQVTE QLLQEVFSST GPLEGCKLIR KDKSSYGFVD YFDRQSAALA
101: IVSLNGRQLF GQCIKVNWAY ASAKREDTSN HFSIFVGDLS PEVTDSTLFA CFSVYPSCSD ARVMWDQKIG RSRGFGFVSF RDQQEAQSAI DDLNGKWLGS
201: RQIRCNWAAK GAGASNDNRS SDAKSAVELT TGTSDDGQLK ANEDAPENNP QYTTVYVGNL APDVTTIDLH RYFHALGAGV IADVRIQRDR GFGFVRYSNH
301: AEAARAIQLG NARILFGKPI KCSWGSKPTP PGSSTNPLPP PVIRQLPGIS AMGLAMYERQ VALARMTGMQ TLMQHQGQRI GVASQVLYDG GIASPQPPVY
401: Y
101: IVSLNGRQLF GQCIKVNWAY ASAKREDTSN HFSIFVGDLS PEVTDSTLFA CFSVYPSCSD ARVMWDQKIG RSRGFGFVSF RDQQEAQSAI DDLNGKWLGS
201: RQIRCNWAAK GAGASNDNRS SDAKSAVELT TGTSDDGQLK ANEDAPENNP QYTTVYVGNL APDVTTIDLH RYFHALGAGV IADVRIQRDR GFGFVRYSNH
301: AEAARAIQLG NARILFGKPI KCSWGSKPTP PGSSTNPLPP PVIRQLPGIS AMGLAMYERQ VALARMTGMQ TLMQHQGQRI GVASQVLYDG GIASPQPPVY
401: Y
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.