Factsheet for TraesCS2B01G195400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G459300.1
TraesCS2A01G459400.1
TraesCS2A01G459500.1
TraesCS2B01G480800.1
TraesCS2B01G480900.1
TraesCS2B01G481200.1
TraesCS2B01G481300.1
TraesCS2D01G459600.1
TraesCS2D01G459700.1
TraesCS2D01G459800.1
TraesCS4A01G296700.1
TraesCS4B01G017000.1
TraesCS4D01G015300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	TraesCS2A01G459300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459400.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459500.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480900.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481200.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459600.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4A01G296700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4B01G017000.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4D01G015300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G176700.1	Wheat	nucleus	98.37	99.06
TraesCS2A01G169100.1	Wheat	nucleus	98.6	98.83
HORVU2Hr1G031260.2	Barley	nucleus, plastid	98.14	84.71
Os07t0615400-01	Rice	nucleus	83.45	83.84
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	67.6	69.54
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	68.3	69.43
GSMUA_Achr10P...	Banana	mitochondrion	68.76	69.41
Solyc06g063000.2.1	Tomato	nucleus	67.37	69.3
GSMUA_Achr6P11660_001	Banana	mitochondrion	68.3	69.27
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	67.6	69.05
KRH47641	Soybean	nucleus	66.9	68.01
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	68.76	67.97
KRH06218	Soybean	nucleus	65.5	67.55
TraesCS4B01G148600.1	Wheat	nucleus	68.3	65.84
Solyc03g122180.2.1	Tomato	nucleus	63.87	65.71
PGSC0003DMT400058919	Potato	nucleus	63.87	65.71
AT1G17370.1	Thale cress	mitochondrion, nucleus	64.1	65.63
CDY63384	Canola	mitochondrion, nucleus	63.64	65.31
Bra030908.1-P	Field mustard	nucleus	63.64	65.16
KRH19347	Soybean	mitochondrion, nucleus	62.24	65.12
AT3G14100.1	Thale cress	nucleus	64.8	65.11
Bra030985.1-P	Field mustard	mitochondrion, nucleus	63.4	65.07
CDY02486	Canola	nucleus	63.64	65.0
KRH02581	Soybean	mitochondrion	62.47	64.89
GSMUA_Achr11P...	Banana	nucleus	67.13	64.86
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	60.61	64.84
CDY51403	Canola	nucleus	63.4	64.76
CDY61476	Canola	nucleus	63.17	64.68
Bra037962.1-P	Field mustard	nucleus	63.17	64.37
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	59.91	64.09
Solyc07g042180.2.1	Tomato	nucleus	59.44	64.07
PGSC0003DMT400066072	Potato	nucleus	61.07	63.9
CDY33092	Canola	nucleus	63.17	63.76
AT1G54080.2	Thale cress	nucleus	61.77	61.63
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	68.53	59.27
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	58.04	55.7
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	18.65	54.79
CDX81822	Canola	mitochondrion, nucleus	63.64	50.09
TraesCS5B01G241400.1	Wheat	nucleus	22.84	28.66
TraesCS2B01G335700.1	Wheat	plastid	23.78	24.29
TraesCS2B01G495700.1	Wheat	nucleus	24.48	24.08
TraesCS6B01G128900.2	Wheat	plastid	22.38	23.02
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	24.24	22.81
TraesCS7B01G199000.1	Wheat	nucleus, plastid	22.14	22.57
TraesCS2B01G247400.4	Wheat	nucleus	24.01	22.2
TraesCS1B01G160900.1	Wheat	nucleus	18.18	21.2
TraesCS4B01G289600.1	Wheat	nucleus	22.61	21.13
TraesCS2B01G378400.1	Wheat	nucleus	22.38	14.44
TraesCS5B01G159400.1	Wheat	cytosol	20.98	13.82
TraesCS7B01G182800.3	Wheat	cytosol	21.45	13.63
TraesCS4B01G204800.1	Wheat	cytosol	20.51	13.52
TraesCS3B01G090800.1	Wheat	mitochondrion	19.11	13.12
TraesCS2B01G599000.1	Wheat	nucleus	27.27	12.02
TraesCS2B01G601400.1	Wheat	nucleus	26.57	11.9
TraesCS2B01G598800.1	Wheat	nucleus	25.64	10.51

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS2B01G195400	EnsemblPlants:TraesCS2B01G195400.1	TIGR:cd12352	TIGR:cd12354	TIGR:cd12619	SEG:seg

Description

No Description!

Coordinates

chr2B:-:172980221..172984609

Molecular Weight (calculated)

46736.0 Da

IEP (calculated)

7.708

GRAVY (calculated)

-0.439

Length

429 amino acids

Sequence
(BLAST)

001: MLPQQSQAAA MMQQAAAMQS MYAMPPPPHH HHLLGAAPPQ QIEPILTGNL PPGFDTSTCR SVYVGNIHVQ VTEALLREVF QSAGSVDGCK LIRKEKSSYG
101: FVDYYERGSA ALAILTLNGK QIFGQPIRVN WAYASGQRED TTDHFHIFVG DLSPEVTDSA LFAFFSAYSP NCSDARVMWD QKTGRSRGYG FVSFRNQQDA
201: QSAINDLNGQ WLGNRQIRCN WATKGANSGE DQLTSDSKSI ADVNNNFTEN AKQKSNEDAP ENNPLYRTVY VGNLAHEVTQ DVLHRFFHAL GAGAIEEVRV
301: QHGKGFGFVK YSNHAETALA IQTGNGRILG GKPVKCSWGN KPTPPGTTSA PLPPPAAPSH PAAADLVAYQ RAIAMSKMAS TQALMQAQHL RHAAMGMGVG
401: ASQAMYDGTF QNVGASQQQQ QQQQQLMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.