Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 89.69 | 98.08 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 81.36 | 97.89 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 87.94 | 96.16 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 51.54 | 90.73 |
| EES05289 | Sorghum | plastid | 80.26 | 84.14 |
| Zm00001d050838_P001 | Maize | plastid | 77.63 | 82.33 |
| TraesCS2B01G335700.1 | Wheat | plastid | 75.22 | 81.67 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 77.41 | 74.47 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 51.75 | 69.01 |
| GSMUA_Achr10P... | Banana | nucleus | 46.05 | 66.88 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 45.18 | 65.81 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.3 | 59.86 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 51.75 | 58.56 |
| Bra027446.1-P | Field mustard | cytosol | 40.79 | 58.12 |
| KRH61258 | Soybean | nucleus | 51.1 | 56.97 |
| KRH05723 | Soybean | nucleus | 51.32 | 56.66 |
| PGSC0003DMT400020621 | Potato | nucleus | 49.12 | 56.57 |
| KRH51956 | Soybean | nucleus | 49.34 | 54.74 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 50.0 | 54.55 |
| KRH15315 | Soybean | nucleus | 50.66 | 54.35 |
| Solyc04g079310.2.1 | Tomato | nucleus | 50.66 | 51.22 |
| CDY06734 | Canola | mitochondrion | 33.77 | 50.49 |
| AT1G47500.1 | Thale cress | nucleus | 47.59 | 50.0 |
| Solyc01g108500.2.1 | Tomato | nucleus | 44.74 | 49.39 |
| CDY52067 | Canola | nucleus | 45.18 | 49.16 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 44.52 | 49.03 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 41.89 | 48.97 |
| CDX95176 | Canola | nucleus | 44.96 | 48.93 |
| AT1G47490.1 | Thale cress | nucleus | 46.27 | 48.84 |
| PGSC0003DMT400066648 | Potato | nucleus | 44.74 | 48.57 |
| KRH71168 | Soybean | nucleus | 44.74 | 47.33 |
| KRH50251 | Soybean | nucleus | 44.52 | 47.1 |
| CDY16528 | Canola | nucleus | 43.42 | 46.7 |
| CDY28101 | Canola | nucleus | 43.86 | 46.62 |
| CDY32840 | Canola | nucleus | 42.98 | 46.56 |
| CDY29341 | Canola | nucleus | 42.32 | 46.06 |
| CDY50959 | Canola | nucleus | 43.42 | 46.05 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 43.2 | 45.18 |
| Solyc10g050860.1.1 | Tomato | nucleus | 42.32 | 45.09 |
| CDY68866 | Canola | nucleus | 41.01 | 45.06 |
| CDY22988 | Canola | nucleus | 41.23 | 44.76 |
| Bra040663.1-P | Field mustard | nucleus | 36.18 | 44.35 |
| CDX82310 | Canola | nucleus | 39.91 | 44.17 |
| Bra001735.1-P | Field mustard | nucleus | 39.91 | 44.17 |
| CDX92304 | Canola | nucleus | 41.01 | 44.1 |
| CDX99265 | Canola | nucleus | 41.01 | 44.1 |
| AT3G19130.1 | Thale cress | nucleus | 41.89 | 43.91 |
| Bra022389.1-P | Field mustard | nucleus | 41.01 | 43.9 |
| TraesCS6B01G128900.2 | Wheat | plastid | 39.69 | 43.41 |
| CDX95462 | Canola | nucleus | 41.01 | 43.09 |
| CDY18570 | Canola | nucleus | 40.79 | 42.86 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 39.47 | 42.76 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 41.45 | 41.18 |
| AT1G49600.3 | Thale cress | nucleus | 40.57 | 41.11 |
| Bra037538.1-P | Field mustard | nucleus | 34.87 | 39.45 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 40.13 | 39.44 |
| Bra014216.1-P | Field mustard | nucleus | 37.94 | 30.24 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 22.81 | 24.24 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 23.46 | 23.94 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 21.71 | 22.25 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 12.94 | 16.03 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 18.64 | 13.06 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 18.86 | 12.93 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 18.86 | 12.74 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 17.76 | 12.44 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 16.23 | 11.84 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 18.2 | 8.66 |
| TraesCS2B01G599000.1 | Wheat | nucleus | 18.2 | 8.53 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 17.76 | 7.74 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS6B01G228100 | EnsemblPlants:TraesCS6B01G228100.1 | TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:357118826..357126066
Molecular Weight (calculated)
49141.9 Da
IEP (calculated)
8.317
GRAVY (calculated)
-0.349
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MPYIGVVSPS ATSSLSFRLH FLASLSLLLL LTAAAAAMQM AAATIDAPVA AAPHPHPHAH GPQVPHGHGH PHPHHHMPQP RWVVLPYPPP PPMVAAPPPP
101: TPQYVKHFAP QASVTPPPPS TGSGGNGGDE NRTIWVGDLQ YWMDENYLHS CFGPSGEVVT IKVIRNRHSG VSEGYGFVEF CSHASAEKAL QNFAGHVMPN
201: TDRAFKLNWA SYSVGEKRSE LASDHSIFVG DLAVDVTDDM LMELFANKYR SVKGAKVIID ANTGRSRGYG FVRFGDDIDR THAMTEMNGV YCSTRPIRIG
301: PATPRRTSVS GDFGTSPPTQ SDGDSTNRTV YVGGLDPNVS EDELRKAFAK YGDVASVKIP VGKQCGFVQF VNRADAEEAL QGLSGLTIGK QAVRLSWGRS
401: PASKQSRGDS GHRRNGMYYG TPFYGGYGYT SPVPHPNVYA AAYGAYPFYG NQQLVS
101: TPQYVKHFAP QASVTPPPPS TGSGGNGGDE NRTIWVGDLQ YWMDENYLHS CFGPSGEVVT IKVIRNRHSG VSEGYGFVEF CSHASAEKAL QNFAGHVMPN
201: TDRAFKLNWA SYSVGEKRSE LASDHSIFVG DLAVDVTDDM LMELFANKYR SVKGAKVIID ANTGRSRGYG FVRFGDDIDR THAMTEMNGV YCSTRPIRIG
301: PATPRRTSVS GDFGTSPPTQ SDGDSTNRTV YVGGLDPNVS EDELRKAFAK YGDVASVKIP VGKQCGFVQF VNRADAEEAL QGLSGLTIGK QAVRLSWGRS
401: PASKQSRGDS GHRRNGMYYG TPFYGGYGYT SPVPHPNVYA AAYGAYPFYG NQQLVS
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.