Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0567900-01 | Rice | cytosol, nucleus | 49.37 | 90.35 |
| EES05289 | Sorghum | plastid | 82.91 | 90.34 |
| Zm00001d050838_P001 | Maize | plastid | 79.96 | 88.14 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 69.83 | 87.34 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 74.68 | 84.89 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 74.47 | 84.65 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 74.47 | 77.41 |
| Zm00001d025551_P002 | Maize | plastid | 70.04 | 73.45 |
| GSMUA_Achr10P... | Banana | nucleus | 44.3 | 66.88 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 43.25 | 65.5 |
| Zm00001d020748_P002 | Maize | plasma membrane | 54.85 | 60.05 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 53.16 | 59.43 |
| Bra027446.1-P | Field mustard | cytosol | 39.45 | 58.44 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.93 | 57.82 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 49.16 | 57.82 |
| PGSC0003DMT400020621 | Potato | nucleus | 46.84 | 56.06 |
| KRH61258 | Soybean | nucleus | 47.68 | 55.26 |
| KRH05723 | Soybean | nucleus | 47.89 | 54.96 |
| KRH51956 | Soybean | nucleus | 46.41 | 53.53 |
| KRH15315 | Soybean | nucleus | 47.47 | 52.94 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 46.62 | 52.87 |
| Zm00001d009512_P001 | Maize | mitochondrion | 14.56 | 52.27 |
| Solyc04g079310.2.1 | Tomato | nucleus | 48.73 | 51.22 |
| CDX95176 | Canola | nucleus | 43.88 | 49.64 |
| CDY52067 | Canola | nucleus | 43.88 | 49.64 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 40.72 | 49.49 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 14.77 | 49.3 |
| CDY06734 | Canola | mitochondrion | 31.65 | 49.18 |
| AT1G47500.1 | Thale cress | nucleus | 44.73 | 48.85 |
| AT1G47490.1 | Thale cress | nucleus | 43.67 | 47.92 |
| Solyc01g108500.2.1 | Tomato | nucleus | 41.14 | 47.22 |
| CDY28101 | Canola | nucleus | 42.41 | 46.85 |
| Zm00001d010739_P001 | Maize | mitochondrion | 12.24 | 46.77 |
| CDY32840 | Canola | nucleus | 41.35 | 46.56 |
| CDY16528 | Canola | nucleus | 41.56 | 46.46 |
| PGSC0003DMT400066648 | Potato | nucleus | 41.14 | 46.43 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 40.51 | 46.38 |
| CDY29341 | Canola | nucleus | 40.93 | 46.3 |
| CDY50959 | Canola | nucleus | 41.98 | 46.28 |
| Zm00001d013812_P001 | Maize | nucleus | 39.45 | 46.06 |
| CDY68866 | Canola | nucleus | 39.66 | 45.3 |
| KRH71168 | Soybean | nucleus | 41.14 | 45.24 |
| Bra040663.1-P | Field mustard | nucleus | 35.44 | 45.16 |
| KRH50251 | Soybean | nucleus | 40.72 | 44.78 |
| CDX99265 | Canola | nucleus | 39.66 | 44.34 |
| CDY22988 | Canola | nucleus | 39.24 | 44.29 |
| AT3G19130.1 | Thale cress | nucleus | 40.3 | 43.91 |
| Bra022389.1-P | Field mustard | nucleus | 39.45 | 43.9 |
| CDX92304 | Canola | nucleus | 39.24 | 43.87 |
| Solyc10g050860.1.1 | Tomato | nucleus | 39.24 | 43.46 |
| CDX82310 | Canola | nucleus | 37.76 | 43.45 |
| Bra001735.1-P | Field mustard | nucleus | 37.76 | 43.45 |
| CDX95462 | Canola | nucleus | 39.24 | 42.86 |
| CDY18570 | Canola | nucleus | 39.03 | 42.63 |
| Zm00001d026346_P002 | Maize | extracellular | 38.4 | 42.52 |
| AT1G49600.3 | Thale cress | nucleus | 39.45 | 41.56 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 39.45 | 41.01 |
| Zm00001d002244_P003 | Maize | nucleus | 38.61 | 40.85 |
| Zm00001d021149_P001 | Maize | cytosol | 14.13 | 40.61 |
| Bra037538.1-P | Field mustard | nucleus | 33.76 | 39.7 |
| Zm00001d007929_P002 | Maize | nucleus | 29.32 | 38.72 |
| Zm00001d021633_P006 | Maize | nucleus | 37.97 | 38.71 |
| Zm00001d006496_P004 | Maize | nucleus | 39.03 | 34.07 |
| Bra014216.1-P | Field mustard | nucleus | 36.5 | 30.24 |
| Zm00001d016252_P001 | Maize | nucleus | 23.21 | 29.26 |
| Zm00001d026528_P001 | Maize | plastid | 11.39 | 24.55 |
| Zm00001d031525_P004 | Maize | nucleus | 22.78 | 23.18 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 13.08 | 23.13 |
| Zm00001d027869_P002 | Maize | nucleus | 36.71 | 22.8 |
| Zm00001d048824_P004 | Maize | nucleus | 21.1 | 22.37 |
| Zm00001d049759_P003 | Maize | nucleus | 20.04 | 20.74 |
| Zm00001d026522_P001 | Maize | nucleus | 9.92 | 19.26 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 13.29 | 17.65 |
| Zm00001d032807_P001 | Maize | nucleus | 13.08 | 17.27 |
| Zm00001d046487_P001 | Maize | cytosol | 18.57 | 13.69 |
| Zm00001d005276_P007 | Maize | cytosol | 18.35 | 13.3 |
| Zm00001d019824_P004 | Maize | cytosol | 18.35 | 13.26 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 18.14 | 13.19 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 17.09 | 12.42 |
| Zm00001d047790_P001 | Maize | plastid | 16.88 | 10.88 |
Protein Annotations
| EntrezGene:100191587 | MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:A0A1D6HB20 | ProteinID:AQK71899.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000844BBA9 | EnsemblPlantsGene:Zm00001d016897 | EnsemblPlants:Zm00001d016897_P002 | EnsemblPlants:Zm00001d016897_T002 |
| SEG:seg | : | : | : | : | : |
Description
Polyadenylate-binding protein RBP47B
Coordinates
chr5:+:179615636..179621420
Molecular Weight (calculated)
51926.7 Da
IEP (calculated)
9.491
GRAVY (calculated)
-0.389
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMAAAVAPT DAPASAAAPA PHPPHAHAAH GPPHPHHHMP QPRWVVIPYP PPHHPMVAAP PPPPPPFVKH FTPPVSVTPP PAGSGGNGGD DNRTIWVGDL
101: QYWMDENYLH SCFGPGGEVV NIKVIRNRHS GVSEGYGFVE FYSHVSAEKA LQNFSGHVMP NTERAFKLNW ASYSMGEKRS EVPPDHSIFV GDLAVDVTDE
201: MLLELFSNKY RSVKGAKVII DANTGRSRGY GFVRFGDDND KTLAMTEMNG VYCSTRPIRV GLATPRRSQG DSGSSPPRQS DVDSTNRTVY VGGLDPNVSE
301: DELRKAFAKY GDLASVKIPF GKQCGFVQFV NRVDAEEALQ GLNGSTIGKQ AIRLSWGRSP TSKQEPLMVL VLPYISVAWF LRLQLSTAVR ICILLFSKKL
401: AKRRKSVNFV AQKVNEAMMV RSRGDYGHRR NGNGMYYGTP FYGGYGYASP VAHPNMYAAA YGAYPYYGNQ QLVS
101: QYWMDENYLH SCFGPGGEVV NIKVIRNRHS GVSEGYGFVE FYSHVSAEKA LQNFSGHVMP NTERAFKLNW ASYSMGEKRS EVPPDHSIFV GDLAVDVTDE
201: MLLELFSNKY RSVKGAKVII DANTGRSRGY GFVRFGDDND KTLAMTEMNG VYCSTRPIRV GLATPRRSQG DSGSSPPRQS DVDSTNRTVY VGGLDPNVSE
301: DELRKAFAKY GDLASVKIPF GKQCGFVQFV NRVDAEEALQ GLNGSTIGKQ AIRLSWGRSP TSKQEPLMVL VLPYISVAWF LRLQLSTAVR ICILLFSKKL
401: AKRRKSVNFV AQKVNEAMMV RSRGDYGHRR NGNGMYYGTP FYGGYGYASP VAHPNMYAAA YGAYPYYGNQ QLVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.