Factsheet for HORVU6Hr1G048390.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, nucleus

Predictor Summary:

mitochondrion 1
nucleus 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, peroxisome
Any Predictor:	cytoskeleton, mitochondrion, nucleus, peroxisome
iPSORT:	mitochondrion
MultiLoc:	nucleus
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G204400.1	Wheat	mitochondrion	88.25	97.1
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	96.4	96.4
Os02t0567900-01	Rice	cytosol, nucleus	56.12	90.35
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	96.16	87.94
EES05289	Sorghum	plastid	87.77	84.14
Zm00001d050838_P001	Maize	plastid	84.17	81.63
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	84.65	74.47
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	73.38	71.66
GSMUA_Achr10P...	Banana	nucleus	50.12	66.56
GSMUA_Achr6P10190_001	Banana	nucleus	49.16	65.5
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	63.55	61.2
GSMUA_Achr6P09470_001	Banana	nucleus	21.1	59.86
GSMUA_Achr3P01720_001	Banana	mitochondrion	56.12	58.06
Bra027446.1-P	Field mustard	cytosol	44.36	57.81
KRH61258	Soybean	nucleus	56.35	57.46
KRH05723	Soybean	nucleus	56.35	56.9
PGSC0003DMT400020621	Potato	nucleus	53.72	56.57
KRH51956	Soybean	nucleus	54.44	55.23
KRH15315	Soybean	nucleus	55.64	54.59
VIT_18s0001g11080.t01	Wine grape	nucleus	54.68	54.55
Solyc04g079310.2.1	Tomato	nucleus	55.4	51.22
CDY06734	Canola	mitochondrion	36.45	49.84
AT1G47500.1	Thale cress	nucleus	51.8	49.77
VIT_03s0063g00850.t01	Wine grape	nucleus	49.16	49.52
Solyc01g108500.2.1	Tomato	nucleus	48.92	49.39
Bra018813.1-P	Field mustard	mitochondrion, nucleus	46.04	49.23
CDY52067	Canola	nucleus	49.16	48.93
CDX95176	Canola	nucleus	48.92	48.69
PGSC0003DMT400066648	Potato	nucleus	48.92	48.57
AT1G47490.1	Thale cress	nucleus	50.12	48.38
KRH71168	Soybean	nucleus	49.16	47.56
KRH50251	Soybean	nucleus	48.92	47.33
CDY16528	Canola	nucleus	47.96	47.17
CDY28101	Canola	nucleus	48.44	47.09
CDY32840	Canola	nucleus	47.48	47.03
CDY29341	Canola	nucleus	46.76	46.54
CDY50959	Canola	nucleus	47.96	46.51
CDY68866	Canola	nucleus	45.08	45.3
CDY22988	Canola	nucleus	45.56	45.24
Solyc10g050860.1.1	Tomato	nucleus	46.28	45.09
Bra040663.1-P	Field mustard	nucleus	39.81	44.62
CDX99265	Canola	nucleus	45.32	44.58
CDX92304	Canola	nucleus	45.32	44.58
AT3G19130.1	Thale cress	nucleus	46.28	44.37
Bra022389.1-P	Field mustard	nucleus	45.32	44.37
Bra001735.1-P	Field mustard	nucleus	43.65	44.17
CDX82310	Canola	nucleus	43.65	44.17
HORVU4Hr1G075700.5	Barley	nucleus	43.88	43.99
CDX95462	Canola	nucleus	45.32	43.55
CDY18570	Canola	nucleus	45.08	43.32
AT1G49600.3	Thale cress	nucleus	44.6	41.33
Bra037538.1-P	Field mustard	nucleus	38.85	40.2
HORVU2Hr1G106810.1	Barley	nucleus	43.65	39.39
HORVU7Hr1G066510.3	Barley	plastid	40.53	38.67
HORVU2Hr1G064650.4	Barley	nucleus	30.94	37.83
HORVU2Hr1G046380.2	Barley	nucleus	32.85	31.07
Bra014216.1-P	Field mustard	nucleus	41.73	30.42
HORVU4Hr1G033990.7	Barley	golgi, nucleus	23.5	22.32
HORVU7Hr1G052090.3	Barley	nucleus	25.66	21.66
HORVU2Hr1G031260.2	Barley	nucleus, plastid	25.42	21.33
HORVU1Hr1G038240.1	Barley	nucleus	14.15	16.03
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	19.66	13.42
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	21.58	12.57
HORVU5Hr1G050560.1	Barley	plastid	20.86	12.39
HORVU4Hr1G059070.1	Barley	cytosol	19.18	12.23
HORVU2Hr1G122920.2	Barley	nucleus	18.47	7.61
HORVU2Hr1G123110.1	Barley	nucleus, plastid	18.47	7.24

Protein Annotations

EnsemblPlants:HORVU6Hr1G048390.1	EnsemblPlantsGene:HORVU6Hr1G048390	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF7	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B481AF1	UniProt:A0A287U443	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chrchr6H:+:291973141..291980709

Molecular Weight (calculated)

45262.0 Da

IEP (calculated)

8.416

GRAVY (calculated)

-0.552

Length

417 amino acids

Sequence
(BLAST)

001: MQMTAAKTDV PAAAAPHPHP HAHGPQVPHG HGHPHPHHHM PQPRWVVLPY PPPPPMVAAP PPPTPQYVKH FAPQASVTPP PPPAGSGGNG GDENRTIWVG
101: DLQYWMDENY LHSCFGPSGE VVTIKVIRNR HSGVSEGYGF VEFYSHASAE KALQNFAGHV MPNTDRAFKL NWASYSVGEK RSELASDHSI FVGDLAVDVT
201: DDMLMELFAN KYRSVKGAKV IIDANTGRSR GYGFVRFGDD IDRTHAMTEM NGMYCSTRPI RIGPATPRRT SGDSGTSPTT QSDGDSTNRT VYVGGLDPNV
301: SEDELRKTFA KYGDVASVKI PVGKQCGFVQ FINRADAEEA LQGLSGSTIG KQAVRLSWGR SPASKQSRGD SGHRRNGMYY GMPFYGGYGY ASPVPHPNVY
401: AAAYGAYPFY GNQQLVS

Best Arabidopsis Sequence Match ( AT1G47500.1 )
(BLAST)

001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS

Arabidopsis Description

RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.