Factsheet for HORVU7Hr1G052090.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	89.88	99.33
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	89.88	99.33
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	89.68	99.11
Os08t0520300-01	Rice	nucleus	84.41	93.29
EES15356	Sorghum	nucleus	83.81	92.62
Zm00001d031525_P004	Maize	nucleus	81.78	86.7
Zm00001d049759_P003	Maize	nucleus	79.35	85.59
GSMUA_Achr9P14120_001	Banana	nucleus	61.13	74.38
VIT_04s0008g02930.t01	Wine grape	nucleus	56.07	69.77
KRH61952	Soybean	mitochondrion	59.72	69.41
KRH52613	Soybean	nucleus	60.53	68.74
HORVU4Hr1G033990.7	Barley	golgi, nucleus	50.2	56.49
HORVU2Hr1G031260.2	Barley	nucleus, plastid	51.42	51.11
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	21.66	25.66
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	22.06	25.17
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	21.26	24.59
HORVU2Hr1G106810.1	Barley	nucleus	20.85	22.29
HORVU4Hr1G075700.5	Barley	nucleus	18.62	22.12
HORVU2Hr1G064650.4	Barley	nucleus	14.17	20.53
HORVU7Hr1G066510.3	Barley	plastid	18.02	20.37
HORVU1Hr1G038240.1	Barley	nucleus	14.17	19.02
HORVU2Hr1G046380.2	Barley	nucleus	16.19	18.14
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	16.8	13.58
HORVU4Hr1G059070.1	Barley	cytosol	16.4	12.39
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	16.6	11.45
HORVU5Hr1G050560.1	Barley	plastid	16.19	11.4
HORVU2Hr1G123110.1	Barley	nucleus, plastid	22.67	10.54
HORVU2Hr1G122920.2	Barley	nucleus	20.85	10.18

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:A0A287WHH1	EMBL:AK358287	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:HORVU7Hr1G052090	EnsemblPlants:HORVU7Hr1G052090.3	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B475366	SEG:seg

Description

No Description!

Coordinates

chrchr7H:-:197650536..197655804

Molecular Weight (calculated)

54202.4 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.587

Length

494 amino acids

Sequence
(BLAST)

001: GEKRGERARA RERKYEEKSH LLFLRSPARS ATRNSPPNLL ICSESEEMNG AGASQQQQQQ QQRLRQQQQQ QQQALLMQQA LQQQQYQSGV LAAAAAAAMT
101: QMEPVSNGNL PPGFDPSTCR SVYVGNVHPN VTENLLIEVF QGSGPVERCK LIRKEKSSFG FVDYYDRRSA ALAIMTLHGR HIYGQAIKVN WAFASTQRED
201: TSGHFHIFVG DLSSEVNDAT LYACFSTYPS CSDARVMWDN KTGRSRGYGF VSFRNQQEAE TAITEMTGKW LGSRQIRCNW ATKTNAEEKQ ETDNHNAVVL
301: TNGGSSNAAM EANQDTGSKE NPENNPDFTT VYVGNLGHEV NRDELHRHFY NLGVGAIEEV RVQQEKGFGF IRYSTHGEAA LAIQMANGLV VRGKPIKCSW
401: GNKPTPPGTS SKPLPPPIAS YQPVAMAGVP QGFTAAELLA YQRQLALSQA AAGQIAGQHG LAGQVSAGLL AAGSQALYDG YPNQTSAQQL MYYN

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.