CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0520300-01	Rice	nucleus	93.51	93.51
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	93.29	93.29
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	92.84	92.84
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	92.62	92.62
Zm00001d031525_P004	Maize	nucleus	95.3	91.42
HORVU7Hr1G052090.3	Barley	nucleus	92.62	83.81
GSMUA_Achr9P14120_001	Banana	nucleus	67.56	74.38
VIT_04s0008g02930.t01	Wine grape	nucleus	61.97	69.77
KRH61952	Soybean	mitochondrion	66.22	69.65
KRH52613	Soybean	nucleus	66.89	68.74
EES08860	Sorghum	nucleus	58.61	59.41
OQU91463	Sorghum	nucleus	25.06	27.38
KXG27152	Sorghum	nucleus	24.61	25.35
EES05289	Sorghum	plastid	24.16	24.83
EES10898	Sorghum	nucleus	23.04	24.35
EER95718	Sorghum	nucleus	19.69	24.31
KXG24662	Sorghum	nucleus	24.61	24.12
KXG35789	Sorghum	nucleus	23.49	23.97
KXG36337	Sorghum	nucleus	25.5	23.9
EER95414	Sorghum	nucleus	21.7	23.37
EER94133	Sorghum	nucleus	14.99	18.87
EES12460	Sorghum	plastid	21.25	14.31
KXG35258	Sorghum	cytosol	20.36	13.87
EER89984	Sorghum	plastid	18.79	13.31
KXG40160	Sorghum	nucleus	19.69	12.21
KXG27463	Sorghum	nucleus	25.73	10.69

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	EntrezGene:8062439	UniProt:C5YIB3	ncoils:Coil	EnsemblPlants:EES15356
ProteinID:EES15356	ProteinID:EES15356.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160
PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3007G203200	SUPFAM:SSF54928
unigene:Sbi.9151	UniParc:UPI0001A878CB	RefSeq:XP_002445861.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:63393929..63399204

Molecular Weight (calculated)

48471.6 Da

IEP (calculated)

7.338

GRAVY (calculated)

-0.493

Length

447 amino acids

Sequence
(BLAST)

001: MNGAGGSHHQ QQQQRLRQQQ QQQALLMQQA LQQQQQYQSG VLAAAAAAAM TQMEPISNGN LPPGFDPSTC RSVYVGNVNP NVTESLLIEV FQSAGLVERC
101: KLIRKEKSSF GFVDYYDRRS AALAIMTLHG RHIYGQAIKV NWAYASTQRE DTSGHFHIFV GDLSSEVNDA TLYACFSAYP SCSDARVMWD NKTGRSRGYG
201: FVSFRNQQEA ETAITEMTGK WLGSRQIRCN WATKNNSEEK PETDNHNAVV LTNGSSSNSA TDASQDGGSK ENPENNPDCT TVYVGNLGHE VNRDELHRHF
301: YSLGVGAIEE IRVQQDKGFG FVRYSTHGEA ALAIQMGNGL VVRGKPIKCS WGNKPTPPGT SSKPLPPPVA PYQPAVAMPG VPQGFTAAEL LAYQRQLALS
401: QAAAGQIAGQ HGLAGQVSAG LLAAAGSQAL YDGYPNQSSA QQLMYYN

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.