Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 4
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050838_P001 | Maize | plastid | 92.18 | 93.26 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 55.4 | 93.05 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 78.62 | 90.24 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 84.14 | 87.77 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 84.14 | 87.77 |
| EES10898 | Sorghum | nucleus | 81.84 | 84.16 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 90.34 | 82.91 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 84.14 | 80.26 |
| GSMUA_Achr10P... | Banana | nucleus | 48.97 | 67.83 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 48.05 | 66.77 |
| KXG35789 | Sorghum | nucleus | 62.07 | 61.64 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 54.25 | 58.56 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.77 | 58.5 |
| Bra027446.1-P | Field mustard | cytosol | 42.99 | 58.44 |
| PGSC0003DMT400020621 | Potato | nucleus | 51.95 | 57.07 |
| KRH61258 | Soybean | nucleus | 52.41 | 55.75 |
| KRH05723 | Soybean | nucleus | 52.64 | 55.45 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 51.72 | 53.83 |
| KRH51956 | Soybean | nucleus | 50.8 | 53.77 |
| KRH15315 | Soybean | nucleus | 51.95 | 53.18 |
| Solyc04g079310.2.1 | Tomato | nucleus | 53.79 | 51.88 |
| CDY06734 | Canola | mitochondrion | 35.17 | 50.16 |
| AT1G47500.1 | Thale cress | nucleus | 49.89 | 50.0 |
| CDY52067 | Canola | nucleus | 47.82 | 49.64 |
| CDX95176 | Canola | nucleus | 47.82 | 49.64 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 44.37 | 49.49 |
| Solyc01g108500.2.1 | Tomato | nucleus | 46.21 | 48.67 |
| AT1G47490.1 | Thale cress | nucleus | 48.28 | 48.61 |
| PGSC0003DMT400066648 | Potato | nucleus | 46.44 | 48.1 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 45.06 | 47.34 |
| CDY32840 | Canola | nucleus | 45.29 | 46.79 |
| CDY16528 | Canola | nucleus | 45.52 | 46.7 |
| CDY28101 | Canola | nucleus | 45.98 | 46.62 |
| OQU91463 | Sorghum | nucleus | 43.45 | 46.21 |
| KRH71168 | Soybean | nucleus | 45.75 | 46.17 |
| CDY29341 | Canola | nucleus | 44.37 | 46.06 |
| CDY50959 | Canola | nucleus | 45.52 | 46.05 |
| KRH50251 | Soybean | nucleus | 45.29 | 45.71 |
| Bra040663.1-P | Field mustard | nucleus | 38.39 | 44.89 |
| Solyc10g050860.1.1 | Tomato | nucleus | 44.14 | 44.86 |
| EER95414 | Sorghum | nucleus | 42.76 | 44.82 |
| CDY68866 | Canola | nucleus | 42.76 | 44.82 |
| CDX99265 | Canola | nucleus | 43.22 | 44.34 |
| AT3G19130.1 | Thale cress | nucleus | 44.14 | 44.14 |
| CDX92304 | Canola | nucleus | 42.99 | 44.1 |
| CDY22988 | Canola | nucleus | 42.53 | 44.05 |
| Bra022389.1-P | Field mustard | nucleus | 42.99 | 43.9 |
| KXG27152 | Sorghum | nucleus | 43.22 | 43.32 |
| Bra001735.1-P | Field mustard | nucleus | 40.92 | 43.2 |
| CDX82310 | Canola | nucleus | 40.92 | 43.2 |
| CDX95462 | Canola | nucleus | 42.99 | 43.09 |
| CDY18570 | Canola | nucleus | 42.76 | 42.86 |
| KXG24662 | Sorghum | nucleus | 44.6 | 42.54 |
| AT1G49600.3 | Thale cress | nucleus | 42.3 | 40.89 |
| EER95718 | Sorghum | nucleus | 33.33 | 40.06 |
| Bra037538.1-P | Field mustard | nucleus | 37.01 | 39.95 |
| KXG36337 | Sorghum | nucleus | 43.68 | 39.83 |
| Bra014216.1-P | Field mustard | nucleus | 40.0 | 30.42 |
| EES15356 | Sorghum | nucleus | 24.83 | 24.16 |
| EES08860 | Sorghum | nucleus | 22.53 | 22.22 |
| EER94133 | Sorghum | nucleus | 14.48 | 17.75 |
| EER89984 | Sorghum | plastid | 19.77 | 13.63 |
| KXG35258 | Sorghum | cytosol | 19.54 | 12.96 |
| EES12460 | Sorghum | plastid | 19.54 | 12.8 |
| KXG40160 | Sorghum | nucleus | 18.85 | 11.37 |
| KXG27463 | Sorghum | nucleus | 19.08 | 7.71 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:8072609 | UniProt:C5XVL1 | EnsemblPlants:EES05289 | ProteinID:EES05289 |
| ProteinID:EES05289.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3004G186900 | SUPFAM:SSF54928 | unigene:Sbi.5840 |
| UniParc:UPI0001A85861 | RefSeq:XP_002452313.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:53903925..53910597
Molecular Weight (calculated)
46809.6 Da
IEP (calculated)
8.419
GRAVY (calculated)
-0.534
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMAAAVAPT DAPASAAAAA PHPHPHPHAA AAAAAAAAAS PHPHAPPHPH HHMPQPRWVV IPYPPPHHPM VAAPPPPPPQ FVKHFAPPAS VTPPPPPAGS
101: GGNGGEDNRT IWVGDLQYWM DENYLHSCFG PSGEVVNIKV IRNRHSGVSE GYGFVEFYSH VSAEKALQNF SGHVMPNTDR AFKLNWASYS MGEKRTELSS
201: DHSIFVGDLA VDVTDEMLLE LFSNKYRSVK GAKVIIDANT GRSRGYGFVR FGDDNDKTHA MTEMNGVYCS TRPIRVGPAT PRRSQGDSGS SPPRQSDVDS
301: TNRTVYVGGL DPNVSEDELR KAFAKYGDLA SVKIPFGKQC GFVQFVNRAD AEEALQGLNG ATIGKQAVRL SWGRSPASKQ SRGDSGHRRN GNGNGMYYGT
401: PFYSGYGYAS PVPHPNMYAA AYGAYPYYGN QQLVS
101: GGNGGEDNRT IWVGDLQYWM DENYLHSCFG PSGEVVNIKV IRNRHSGVSE GYGFVEFYSH VSAEKALQNF SGHVMPNTDR AFKLNWASYS MGEKRTELSS
201: DHSIFVGDLA VDVTDEMLLE LFSNKYRSVK GAKVIIDANT GRSRGYGFVR FGDDNDKTHA MTEMNGVYCS TRPIRVGPAT PRRSQGDSGS SPPRQSDVDS
301: TNRTVYVGGL DPNVSEDELR KAFAKYGDLA SVKIPFGKQC GFVQFVNRAD AEEALQGLNG ATIGKQAVRL SWGRSPASKQ SRGDSGHRRN GNGNGMYYGT
401: PFYSGYGYAS PVPHPNMYAA AYGAYPYYGN QQLVS
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.