Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G47500.1 | Thale cress | nucleus | 91.2 | 90.78 |
| CDY06734 | Canola | mitochondrion | 49.77 | 70.49 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 49.54 | 68.59 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 47.92 | 66.35 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 63.89 | 66.03 |
| PGSC0003DMT400020621 | Potato | nucleus | 59.72 | 65.15 |
| KRH61258 | Soybean | nucleus | 61.34 | 64.79 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 51.16 | 64.62 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 51.16 | 64.62 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 50.93 | 64.33 |
| GSMUA_Achr10P... | Banana | nucleus | 46.06 | 63.38 |
| KRH51956 | Soybean | nucleus | 59.95 | 63.02 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 45.6 | 62.94 |
| KRH05723 | Soybean | nucleus | 59.72 | 62.47 |
| KRH15315 | Soybean | nucleus | 60.19 | 61.18 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 36.34 | 60.62 |
| Solyc04g079310.2.1 | Tomato | nucleus | 61.57 | 58.98 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 55.32 | 55.2 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 53.94 | 54.95 |
| KXG35789 | Sorghum | nucleus | 55.56 | 54.79 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 50.46 | 54.09 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 47.45 | 54.09 |
| Zm00001d020748_P002 | Maize | plasma membrane | 53.94 | 53.81 |
| Os04t0449900-01 | Rice | plastid | 47.45 | 52.97 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.82 | 52.38 |
| AT3G19130.1 | Thale cress | nucleus | 52.55 | 52.18 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 51.39 | 50.34 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 48.38 | 50.12 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 48.38 | 50.12 |
| EES10898 | Sorghum | nucleus | 49.07 | 50.12 |
| TraesCS2A01G317700.2 | Wheat | plastid | 48.84 | 49.76 |
| TraesCS2D01G315400.2 | Wheat | plastid | 48.84 | 49.76 |
| TraesCS2B01G335700.1 | Wheat | plastid | 48.15 | 49.52 |
| AT1G49600.3 | Thale cress | nucleus | 50.69 | 48.67 |
| EES05289 | Sorghum | plastid | 48.61 | 48.28 |
| Zm00001d050838_P001 | Maize | plastid | 47.69 | 47.91 |
| AT5G54900.1 | Thale cress | nucleus | 42.82 | 47.8 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 46.99 | 47.54 |
| AT1G11650.2 | Thale cress | nucleus | 44.44 | 47.41 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 48.84 | 46.27 |
| AT4G27000.1 | Thale cress | nucleus | 43.75 | 45.54 |
| Zm00001d025551_P002 | Maize | plastid | 47.22 | 45.13 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 47.92 | 43.67 |
| AT5G19350.1 | Thale cress | cytosol | 42.13 | 42.82 |
| AT1G54080.2 | Thale cress | nucleus | 23.61 | 23.72 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 22.92 | 23.63 |
| AT3G14100.1 | Thale cress | nucleus | 22.92 | 23.18 |
| AT2G18510.1 | Thale cress | nucleus | 14.58 | 17.36 |
| AT1G34140.1 | Thale cress | nucleus | 15.97 | 16.95 |
| AT4G34110.1 | Thale cress | cytosol | 24.31 | 16.69 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 24.07 | 15.76 |
| AT2G23350.1 | Thale cress | nucleus | 23.61 | 15.41 |
| AT1G49760.1 | Thale cress | cytosol | 23.38 | 15.05 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 20.14 | 14.29 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 22.22 | 14.08 |
| AT3G16380.1 | Thale cress | nucleus | 17.36 | 13.97 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:841157 | ProteinID:AAD46038.1 | ProteinID:AEE32173.1 | ProteinID:AEE32174.1 |
| EMBL:AF344325 | ArrayExpress:AT1G47490 | EnsemblPlantsGene:AT1G47490 | RefSeq:AT1G47490 | TAIR:AT1G47490 | RefSeq:AT1G47490-TAIR-G |
| EnsemblPlants:AT1G47490.1 | TAIR:AT1G47490.1 | Symbol:ATRBP47C | EMBL:AY035180 | EMBL:AY062960 | Unigene:At.22563 |
| EMBL:BX813781 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0008143 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0010494 | GO:GO:0034605 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_175180.1 |
| RefSeq:NP_973984.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0007131 |
| PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 |
| UniProt:Q9SX79 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000009CC27 |
| SEG:seg | : | : | : | : | : |
Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
Coordinates
chr1:+:17424473..17427475
Molecular Weight (calculated)
48500.6 Da
IEP (calculated)
6.570
GRAVY (calculated)
-0.857
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.