Factsheet for PGSC0003DMT400020621

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079310.2.1	Tomato	nucleus	97.73	85.81
VIT_18s0001g11080.t01	Wine grape	nucleus	78.79	74.64
GSMUA_Achr9P15210_001	Banana	nucleus	58.33	74.04
KRH05723	Soybean	nucleus	74.24	71.19
GSMUA_Achr3P06840_001	Banana	nucleus	56.06	71.15
TraesCS5A01G243500.1	Wheat	nucleus	61.36	71.05
TraesCS5B01G241400.1	Wheat	nucleus	61.36	71.05
TraesCS5D01G250100.1	Wheat	nucleus	61.36	71.05
GSMUA_Achr10P...	Banana	nucleus	56.31	71.02
KRH61258	Soybean	nucleus	72.73	70.42
GSMUA_Achr6P10190_001	Banana	nucleus	55.56	70.29
Bra027446.1-P	Field mustard	cytosol	56.06	69.38
KRH15315	Soybean	nucleus	73.99	68.94
KRH51956	Soybean	nucleus	71.46	68.86
Os02t0567900-01	Rice	cytosol, nucleus	43.43	66.41
CDY06734	Canola	mitochondrion	46.97	60.98
AT1G47490.1	Thale cress	nucleus	65.15	59.72
KXG35789	Sorghum	nucleus	65.91	59.59
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	64.65	59.12
Zm00001d020748_P002	Maize	plasma membrane	64.65	59.12
TraesCS6A01G204400.1	Wheat	mitochondrion	56.57	59.1
Os04t0449900-01	Rice	plastid	57.58	58.91
PGSC0003DMT400066648	Potato	nucleus	62.12	58.57
GSMUA_Achr3P01720_001	Banana	mitochondrion	59.6	58.56
AT1G47500.1	Thale cress	nucleus	64.14	58.53
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	62.63	58.49
CDY52067	Canola	nucleus	61.62	58.23
CDX95176	Canola	nucleus	61.62	58.23
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	62.63	56.24
EES10898	Sorghum	nucleus	58.33	54.61
GSMUA_Achr6P09470_001	Banana	nucleus	20.2	54.42
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	56.57	53.72
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	55.81	53.0
TraesCS2B01G335700.1	Wheat	plastid	55.81	52.62
TraesCS2D01G315400.2	Wheat	plastid	56.31	52.59
TraesCS2A01G317700.2	Wheat	plastid	56.31	52.59
EES05289	Sorghum	plastid	57.07	51.95
Zm00001d050838_P001	Maize	plastid	56.31	51.86
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	55.05	51.05
PGSC0003DMT400013036	Potato	nucleus	50.25	49.75
PGSC0003DMT400057203	Potato	cytosol	50.25	49.38
PGSC0003DMT400029379	Potato	nucleus	49.75	49.25
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	56.57	49.12
Zm00001d025551_P002	Maize	plastid	55.81	48.89
PGSC0003DMT400042504	Potato	nucleus	49.75	47.7
PGSC0003DMT400018998	Potato	nucleus	50.0	47.37
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	56.06	46.84
PGSC0003DMT400066072	Potato	nucleus	27.27	26.34
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	26.26	25.94
PGSC0003DMT400058919	Potato	nucleus	26.52	25.18
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	26.01	24.7
PGSC0003DMT400012508	Potato	nucleus	7.07	22.58
PGSC0003DMT400014744	Potato	nucleus	15.66	17.03
PGSC0003DMT400023075	Potato	nucleus	15.4	16.8
PGSC0003DMT400039842	Potato	cytosol	23.23	15.33
PGSC0003DMT400066245	Potato	extracellular	24.49	15.09
PGSC0003DMT400033802	Potato	cytosol	22.22	14.47
PGSC0003DMT400021673	Potato	cytosol	22.73	14.33
PGSC0003DMT400064531	Potato	cytosol	18.94	14.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400020621	EnsemblPlantsGene:PGSC0003DMG400007990	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400007990	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002950098	UniProt:M1ADU0	MapMan:16.9.4	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007990]

Coordinates

chr4:+:68639139..68644686

Molecular Weight (calculated)

43659.7 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.665

Length

396 amino acids

Sequence
(BLAST)

001: MQYPAAAMVM QHPMMPSPHY PPHYMPFHPQ HHHHLIHHPP HSPSPHQQGG GGGSNNNENR TIWVGDLHNW MDEDYLRSCF ATTNEVASIK VIRNKQTGFS
101: EGYGFVEFFT HASAEKVLQT YSCMTMPNAE QPFRLNWATF SMGDKRVNNG SDLSIFVGDL AADVTDTLLH ETFSQKYPSV KAAKVVIDAN TGRSKGYGFV
201: RFGDDNERSS AMNEMNGVYC SSRPMRIGAA TPRKSSGYPQ QYSSQGGYSN GGPVQGSQPD ADSTNTTIFV GGLDPNVSDE DLRQPFAQYG EIVSVKIPVG
301: KGCGFVQFAN RNDAEEALQK LNGTAIGKQT VRLSWGRNPA NKQSRSDFGN QWTGPYYGGH FYDGYGYAFP PPHDPGMYAA AYGAYPVYGT HQQQVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.