Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020621 | Potato | nucleus | 74.64 | 78.79 |
| KRH61258 | Soybean | nucleus | 76.79 | 78.48 |
| KRH05723 | Soybean | nucleus | 76.79 | 77.72 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 57.42 | 76.92 |
| KRH51956 | Soybean | nucleus | 75.36 | 76.64 |
| KRH15315 | Soybean | nucleus | 77.27 | 76.0 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 55.26 | 74.04 |
| GSMUA_Achr10P... | Banana | nucleus | 55.26 | 73.57 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 54.78 | 73.16 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 59.33 | 72.51 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 59.09 | 72.22 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 59.09 | 72.22 |
| Bra027446.1-P | Field mustard | cytosol | 54.78 | 71.56 |
| Solyc04g079310.2.1 | Tomato | nucleus | 75.84 | 70.29 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 68.66 | 69.32 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 39.95 | 64.48 |
| AT1G47490.1 | Thale cress | nucleus | 66.03 | 63.89 |
| CDY06734 | Canola | mitochondrion | 46.41 | 63.61 |
| AT1G47500.1 | Thale cress | nucleus | 66.03 | 63.59 |
| KXG35789 | Sorghum | nucleus | 66.27 | 63.24 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 65.07 | 62.82 |
| Zm00001d020748_P002 | Maize | plasma membrane | 65.07 | 62.82 |
| CDY52067 | Canola | nucleus | 62.44 | 62.29 |
| CDX95176 | Canola | nucleus | 61.72 | 61.58 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 62.44 | 61.56 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 59.33 | 61.54 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 53.11 | 58.58 |
| Os04t0449900-01 | Rice | plastid | 53.83 | 58.14 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 20.33 | 57.82 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 60.29 | 57.14 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 54.55 | 54.68 |
| EES10898 | Sorghum | nucleus | 55.02 | 54.37 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 54.07 | 54.2 |
| TraesCS2B01G335700.1 | Wheat | plastid | 53.83 | 53.57 |
| TraesCS2D01G315400.2 | Wheat | plastid | 54.31 | 53.54 |
| TraesCS2A01G317700.2 | Wheat | plastid | 54.31 | 53.54 |
| EES05289 | Sorghum | plastid | 53.83 | 51.72 |
| Zm00001d050838_P001 | Maize | plastid | 52.63 | 51.16 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 51.44 | 50.35 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 54.55 | 50.0 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 54.07 | 48.81 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 51.44 | 48.31 |
| Zm00001d025551_P002 | Maize | plastid | 51.91 | 48.01 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 52.87 | 46.62 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 26.55 | 26.3 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 26.08 | 25.95 |
| VIT_04s0008g02930.t01 | Wine grape | nucleus | 23.92 | 25.19 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 6.46 | 18.49 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 16.27 | 18.23 |
| VIT_09s0002g03160.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 18.66 | 16.39 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 24.88 | 15.78 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 22.73 | 14.84 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 23.21 | 14.83 |
| VIT_08s0007g04380.t01 | Wine grape | cytosol | 21.77 | 14.35 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 22.73 | 12.07 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 2.15 | 7.2 |
| VIT_18s0001g10220.t01 | Wine grape | cytosol | 0.72 | 3.0 |
| VIT_18s0001g10210.t01 | Wine grape | cytosol | 0.24 | 1.59 |
Protein Annotations
| EntrezGene:100257353 | wikigene:100257353 | MapMan:16.9.4 | Gene3D:3.30.70.330 | ProteinID:CCB45871 | ProteinID:CCB45871.1 |
| UniProt:F6H1D6 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100257353 | wikigene:LOC100257353 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:TC66228 | UniParc:UPI0001985416 | ArrayExpress:VIT_18s0001g11080 | EnsemblPlantsGene:VIT_18s0001g11080 | EnsemblPlants:VIT_18s0001g11080.t01 |
| RefSeq:XP_002284337 | RefSeq:XP_002284337.2 | RefSeq:XP_003634360 | RefSeq:XP_003634360.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr18:+:9401110..9407290
Molecular Weight (calculated)
46278.6 Da
IEP (calculated)
6.837
GRAVY (calculated)
-0.748
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSTNGSDPQ QANQQQQQPP PPPPQPQQWM AMQYPAAAMV MQHQMMPPQH YPQHFVAYHH QPHQYQHQHQ QQHQQQQGSN ADNRTIWVGD LHNWMDENYL
101: HSCFAATGEL ASMKVIRNKQ TGSSEGYGFV EFFSHAAAEK VLQGYAGVLM PNTDQPFRLN WATFSMGDKR SDNGPDLSIF VGDLASDVSD SLLHETFAGK
201: YPSVKAAKVV FDANTGRSKG YGFVRFGDEN ERSQAMTEMN GVYCSSRPMR IGAATPRKSS GYQQQYSSHG GYASNGASVQ SDGDSMNTTI FVGGLDPNVS
301: DEDLRQPFSQ YGEIVSVKIP VGKGCGFVQF ANRNNAEDAL QKLNGTVIGK QTVRLSWGRN PANKQMRADF GNQWSGAYYG GQVYDGYGYA LPPPHDPTMY
401: AAAYGAYPVY GNHQQQVS
101: HSCFAATGEL ASMKVIRNKQ TGSSEGYGFV EFFSHAAAEK VLQGYAGVLM PNTDQPFRLN WATFSMGDKR SDNGPDLSIF VGDLASDVSD SLLHETFAGK
201: YPSVKAAKVV FDANTGRSKG YGFVRFGDEN ERSQAMTEMN GVYCSSRPMR IGAATPRKSS GYQQQYSSHG GYASNGASVQ SDGDSMNTTI FVGGLDPNVS
301: DEDLRQPFSQ YGEIVSVKIP VGKGCGFVQF ANRNNAEDAL QKLNGTVIGK QTVRLSWGRN PANKQMRADF GNQWSGAYYG GQVYDGYGYA LPPPHDPTMY
401: AAAYGAYPVY GNHQQQVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.