Factsheet for VIT_09s0002g03160.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72408	Canola	plastid	11.55	59.14
Bra034301.1-P	Field mustard	mitochondrion	11.97	51.35
CDY57754	Canola	nucleus	21.64	48.36
CDY33264	Canola	mitochondrion, nucleus	19.96	47.5
AT3G16380.1	Thale cress	nucleus	45.38	40.22
CDY30168	Canola	cytosol	45.38	40.15
GSMUA_Achr4P00840_001	Banana	cytosol	39.92	39.26
CDY56198	Canola	cytosol	40.13	39.06
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	40.76	37.16
VIT_08s0007g04380.t01	Wine grape	cytosol	47.27	35.49
VIT_18s0001g10170.t01	Wine grape	cytosol	44.75	33.28
VIT_07s0031g00210.t01	Wine grape	cytosol	43.49	31.65
VIT_18s0001g02490.t01	Wine grape	plastid	42.44	30.65
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	43.91	26.56
VIT_04s0023g01470.t01	Wine grape	nucleus	18.49	23.59
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	18.49	20.85
VIT_04s0008g02930.t01	Wine grape	nucleus	17.23	20.65
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	17.86	20.24
VIT_03s0063g00850.t01	Wine grape	nucleus	17.44	20.05
VIT_18s0001g11080.t01	Wine grape	nucleus	16.39	18.66
VIT_19s0090g00280.t01	Wine grape	nucleus	17.44	17.93
VIT_06s0004g02040.t01	Wine grape	nucleus	15.76	16.85
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	4.62	15.07
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.52	9.6
VIT_18s0001g10210.t01	Wine grape	cytosol	0.21	1.59
VIT_18s0001g10220.t01	Wine grape	cytosol	0.21	1.0

Protein Annotations

EntrezGene:100256670	wikigene:100256670	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:CBI36032	ProteinID:CBI36032.3
UniProt:D7U086	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100256670	wikigene:LOC100256670	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP_1234	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR24012	PANTHER:PTHR24012:SF674	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	TIGRFAMs:TIGR01628	UniParc:UPI00015C9169	ArrayExpress:VIT_09s0002g03160	EnsemblPlantsGene:VIT_09s0002g03160
EnsemblPlants:VIT_09s0002g03160.t01	RefSeq:XP_002277538	RefSeq:XP_002277538.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:2903493..2906826

Molecular Weight (calculated)

52866.4 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.356

Length

476 amino acids

Sequence
(BLAST)

001: MAAMLVSPPP PPQLLHPPPP SPGFELHKAA LYVGDLDPEV SEVELVDVFS GMGPLVSVRL CRDSLSGKSL CYAYVNFFHP SDASKALACL NHTKLMGKPM
101: RIMWSHRDPL PRKTGLANLF VKNLDPSINS ASLQDIFCKF GNILSCKVAE ENGKSKCFGF VQFDSDDSAT AALNALNDTM LDGKKLFVSK FVKKCERKEA
201: SEETKFTNVY VKNLGEDLTE DIIRDKFSEF GKVGTVVIMK DGNGKSRGFG FVNFESPDEA KKAVEALNGA MLGSKKLFVG RAQKKAERQE LLKHEKEMVN
301: CNIGKEKASN LYVKNLDASV DDDKLQEHFS SCGQITSAKV MRHDSGLSKG FGFVCFSTSE EAQKALTTLN GTLLHGRSLY IAMAQRKEDR QRVLRDYYSQ
401: YLLQYYGPHF LSSGSSSPDY SFVPFPHPNP TPQINSPQPI ICQQFGRNLG VMRPFAPQNY QQNFSTFVRK PSGFIL

Best Arabidopsis Sequence Match ( AT3G16380.1 )
(BLAST)

001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ

Arabidopsis Description

PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.