Factsheet for GSMUA_Achr4P00840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034301.1-P	Field mustard	mitochondrion	10.12	44.14
CDY72408	Canola	plastid	8.26	43.01
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	39.26	39.92
CDY33264	Canola	mitochondrion, nucleus	15.91	38.5
CDY57754	Canola	nucleus	14.88	33.8
AT3G16380.1	Thale cress	nucleus	35.95	32.4
CDY30168	Canola	cytosol	33.88	30.48
CDY56198	Canola	cytosol	29.55	29.24
GSMUA_Achr5P24940_001	Banana	plastid	39.67	28.83
GSMUA_Achr9P00990_001	Banana	cytosol	38.43	28.57
GSMUA_Achr4P09890_001	Banana	cytosol	38.43	28.53
GSMUA_AchrUn_...	Banana	cytosol	38.22	28.37
GSMUA_Achr4P20270_001	Banana	cytosol	37.19	27.99
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	30.17	27.97
GSMUA_Achr9P10860_001	Banana	cytosol	39.26	26.57
GSMUA_Achr9P15210_001	Banana	nucleus	16.32	25.32
GSMUA_Achr6P10190_001	Banana	nucleus	16.32	25.24
GSMUA_Achr3P06840_001	Banana	nucleus	16.12	25.0
GSMUA_Achr10P...	Banana	nucleus	16.12	24.84
GSMUA_Achr6P29410_001	Banana	nucleus	15.7	23.17
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	30.37	22.69
GSMUA_Achr3P01720_001	Banana	mitochondrion	18.8	22.58
GSMUA_Achr6P09470_001	Banana	nucleus	6.61	21.77
GSMUA_Achr9P24980_001	Banana	cytosol	14.88	21.75
GSMUA_Achr8P31320_001	Banana	nucleus	17.77	21.5
GSMUA_Achr7P05430_001	Banana	nucleus	38.64	20.69
GSMUA_Achr10P...	Banana	mitochondrion	17.98	20.47
GSMUA_Achr6P11660_001	Banana	mitochondrion	17.77	20.33
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	16.94	20.15
GSMUA_Achr5P20140_001	Banana	nucleus	15.08	19.95
GSMUA_Achr10P...	Banana	nucleus	17.77	19.82
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	17.36	19.35
GSMUA_Achr9P14120_001	Banana	nucleus	15.91	18.97
GSMUA_Achr11P...	Banana	nucleus	17.36	18.92
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	16.32	15.93

Protein Annotations

EnsemblPlants:GSMUA_Achr4P00840_001	EnsemblPlants:GSMUA_Achr4T00840_001	EnsemblPlantsGene:GSMUA_Achr4G00840_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002953F96	UniProt:M0SK01	MapMan:17.4.2.5	:	:

Description

Putative Probable polyadenylate-binding protein At2g36660 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00840_001]

Coordinates

chr4:+:719462..721956

Molecular Weight (calculated)

53702.2 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.229

Length

484 amino acids

Sequence
(BLAST)

001: MGDMAAAAAT LHPDEMNAAA APTSLHLPPF PTLYIGDLHP AVTDAELIYA FTRFGTVASA RVCRDRASGT SLGYAYLNYL SFSDAEKALK AMNHSLLHGR
101: PMRIMWSQRN PMSRKNGIGN LFVKNLEISV SGTVLEDLFA VYGTVESCKV AIDGSGRSRG FGFVQMDSEE AAQLAIKALN GVILPGSSKK LCVTKFVKKS
201: ERQALPEGPS GTNLYIKNLD WDITDDVLRQ RFSAYGNISS AVVMKDRGGK SRGFGFVDFE SPEAAKNALE NLNGSDLGSK SLYVRYAQKR SERDKLLRLR
301: FAGRPEHKFT KIQGSTVFVK NLERSIDNAA LRRLFSESGM VLRTKVIYDK NGLSRGFGFV CFSSAEEANE AVQRFNGNMF YSRRLYVTIA QNKEDRQKNL
401: QLQFANFKIV PVQHAVSHDS IPAAYHVPNY DWFQNQMHVN PVYLCQQNGM VHFLGTQACS SNVPTCYFRS LINGGSWIIE VLAL

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.