Factsheet for GSMUA_Achr6P29410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P24980_001	Banana	cytosol	89.63	88.82
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	85.37	68.8
GSMUA_Achr10P...	Banana	nucleus	87.2	65.9
GSMUA_Achr9P15210_001	Banana	nucleus	60.67	63.78
GSMUA_Achr3P06840_001	Banana	nucleus	59.45	62.5
Os03t0569900-01	Rice	nucleus	73.78	60.2
GSMUA_Achr6P10190_001	Banana	nucleus	57.32	60.06
GSMUA_Achr10P...	Banana	nucleus	57.01	59.55
Zm00001d013812_P001	Maize	nucleus	73.17	59.11
OQU91463	Sorghum	nucleus	73.48	58.92
Zm00001d009512_P001	Maize	mitochondrion	21.65	53.79
GSMUA_Achr8P31320_001	Banana	nucleus	64.33	52.75
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	21.95	50.7
TraesCS2B01G247400.4	Wheat	nucleus	67.68	47.84
TraesCS2A01G221900.2	Wheat	nucleus	67.68	47.84
TraesCS2D01G227900.5	Wheat	nucleus	67.38	47.63
Zm00001d010739_P001	Maize	mitochondrion	17.99	47.58
Os07t0516900-01	Rice	plastid	35.98	47.01
GSMUA_Achr3P01720_001	Banana	mitochondrion	55.79	45.41
KXG36337	Sorghum	nucleus	65.24	44.86
TraesCS2D01G266400.1	Wheat	nucleus	48.48	44.66
EER95718	Sorghum	nucleus	49.09	44.48
TraesCS2A01G256500.1	Wheat	nucleus	47.87	44.1
Zm00001d007929_P002	Maize	nucleus	48.17	44.01
Zm00001d021633_P006	Maize	nucleus	61.28	43.23
HORVU2Hr1G046380.2	Barley	nucleus	56.71	42.18
HORVU2Hr1G064650.4	Barley	nucleus	39.63	38.12
Zm00001d006496_P004	Maize	nucleus	62.8	37.94
GSMUA_Achr6P09470_001	Banana	nucleus	16.77	37.41
Zm00001d016252_P001	Maize	nucleus	32.62	28.46
GSMUA_Achr9P14120_001	Banana	nucleus	28.96	23.4
GSMUA_Achr10P...	Banana	mitochondrion	29.27	22.59
GSMUA_Achr6P11660_001	Banana	mitochondrion	28.96	22.46
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	17.99	22.01
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	28.66	21.66
GSMUA_Achr11P...	Banana	nucleus	28.96	21.4
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	27.74	18.35
GSMUA_Achr4P00840_001	Banana	cytosol	23.17	15.7
GSMUA_Achr5P20140_001	Banana	nucleus	17.07	15.3
GSMUA_Achr9P00990_001	Banana	cytosol	28.05	14.13
GSMUA_Achr4P20270_001	Banana	cytosol	27.44	14.0
GSMUA_Achr4P09890_001	Banana	cytosol	26.83	13.5
GSMUA_AchrUn_...	Banana	cytosol	26.83	13.5
GSMUA_Achr5P24940_001	Banana	plastid	26.83	13.21
GSMUA_Achr9P10860_001	Banana	cytosol	25.3	11.61
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	22.26	11.27
GSMUA_Achr7P05430_001	Banana	nucleus	26.52	9.62

Protein Annotations

EnsemblPlants:GSMUA_Achr6P29410_001	EnsemblPlants:GSMUA_Achr6T29410_001	EnsemblPlantsGene:GSMUA_Achr6G29410_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296956E	UniProt:M0TB86	MapMan:16.9.4	:

Description

Putative Uncharacterized RNA-binding protein C23E6.01c [Source:GMGC_GENE;Acc:GSMUA_Achr6G29410_001]

Coordinates

chr6:-:29640442..29649734

Molecular Weight (calculated)

36506.2 Da

IEP (calculated)

5.386

GRAVY (calculated)

-0.744

Length

328 amino acids

Sequence
(BLAST)

001: MDENYLYSCF AHTGEVVSVK IIRNKQSGQS EGYGFLEFVS HAGADRILQT YNGQVMPNTE QAFRLNWATC GAGERRGDGV DYTIFVGDLA ADVTDYLLQE
101: TFKNHYSSVK GAKVVTDRLT GRSKGYGFVK FGDPNEQTRA MTEMNGVYCS TRPMRIGPAA DKKSLGTQQQ YPSNASYQTT QGAESENDPN NTTIFVGGLD
201: PNVTDEHLRQ VFSPYGEIVY IKIPVGKRCG FVQFGNRANA EEALQMLNGT LLGGQNVRLS WGRSPTNKQP QQDPNQWNGN YYGYTQSYDA YGYAPPQDPN
301: MYAYATYPGY GNYQQQQPPQ QPPQVTDC

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.