Factsheet for TraesCS2D01G266400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G256500.1	Wheat	nucleus	98.31	98.31
HORVU2Hr1G064650.4	Barley	nucleus	78.37	81.82
EER95718	Sorghum	nucleus	54.21	53.31
Zm00001d007929_P002	Maize	nucleus	53.65	53.2
GSMUA_Achr6P29410_001	Banana	nucleus	44.66	48.48
GSMUA_Achr9P24980_001	Banana	cytosol	43.26	46.53
Os03t0569900-01	Rice	nucleus	49.72	44.03
TraesCS5D01G250100.1	Wheat	nucleus	39.04	40.64
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	45.51	39.8
GSMUA_Achr10P...	Banana	nucleus	46.91	38.48
TraesCS6D01G081700.2	Wheat	plastid	40.45	35.12
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	40.45	34.53
TraesCS2D01G315400.2	Wheat	plastid	40.73	34.2
TraesCS2D01G472700.1	Wheat	nucleus	41.57	33.95
TraesCS2D01G227900.5	Wheat	nucleus	42.13	32.33
TraesCS4D01G288600.1	Wheat	nucleus	37.08	28.88
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	22.47	17.9
TraesCS2D01G176700.1	Wheat	nucleus	19.66	16.43
TraesCS4D01G150600.2	Wheat	nucleus	19.94	15.81
TraesCS3D01G076800.1	Wheat	mitochondrion	10.39	14.86
TraesCS3D01G076700.1	Wheat	mitochondrion	16.01	12.81
TraesCS1D01G142300.1	Wheat	nucleus	12.36	11.96
TraesCS2D01G358000.1	Wheat	cytosol	22.19	11.9
TraesCS5D01G167000.1	Wheat	nucleus, unclear	21.35	11.67
TraesCS7D01G287900.1	Wheat	cytosol	20.79	11.6
TraesCS4D01G205700.1	Wheat	cytosol	19.94	10.87
TraesCS2D01G593700.1	Wheat	nucleus	19.94	7.32
TraesCS2D01G594800.1	Wheat	nucleus	18.54	6.9
TraesCS2D01G593900.1	Wheat	nucleus	17.98	6.24

Protein Annotations

EnsemblPlants:TraesCS2D01G266400.1	EnsemblPlantsGene:TraesCS2D01G266400	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR43955
PANTHER:PTHR43955:SF9	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12344	TIGR:cd12345	MapMan:16.9.4	:	:	:

Description

No Description!

Coordinates

chr2D:-:324914466..324918067

Molecular Weight (calculated)

39621.9 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.672

Length

356 amino acids

Sequence
(BLAST)

001: MAHPPPRNWA MAPPYHYHGT SQQEQAAPAA EDESGAGSGG QEAESRSLRI RELFPWMDED YLRSCFTRSP ELVTAVITRN KETKQSEGFG YLTFSDHATA
101: DQILQSYNGQ KMPNADRDFS LSWVQYAGPD DDCAIYVGGL GFDVTDFMLH HVFKNRYPSV KRAKVIWDFL ARRSKGYGFV VFGDVNERTQ AMTEMNGAYC
201: SSRPMRIGPA TFKSDFRTQG TYSDSNQNNS RLFVGQLDSC VTDEDLDKAF SPYGELTVKV IEGKNCGFVT YSSRASAVEA MTILNGSQLG DNIITVNWAR
301: PAPKKQDQWN GVDHGHPQSS GPGYGCCPED PNILGYTGHP GYAYHQQQQP QQTPVQ

Best Arabidopsis Sequence Match ( AT1G47500.1 )
(BLAST)

001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS

Arabidopsis Description

RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.