Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G100800.1 | Wheat | nucleus | 97.8 | 97.8 |
| TraesCS6B01G128900.2 | Wheat | plastid | 96.59 | 94.96 |
| Os08t0190200-00 | Rice | nucleus | 80.73 | 74.89 |
| KXG24662 | Sorghum | nucleus | 80.98 | 72.81 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 79.76 | 71.71 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 75.12 | 70.64 |
| HORVU7Hr1G066510.3 | Barley | plastid | 75.12 | 70.48 |
| KRH20867 | Soybean | nucleus | 61.71 | 61.86 |
| KRH51075 | Soybean | endoplasmic reticulum | 59.51 | 61.46 |
| KRH11417 | Soybean | nucleus | 61.22 | 61.07 |
| KRH02082 | Soybean | nucleus | 59.76 | 60.95 |
| PGSC0003DMT400029379 | Potato | nucleus | 55.85 | 57.25 |
| Solyc03g031720.2.1 | Tomato | nucleus | 56.34 | 57.04 |
| PGSC0003DMT400013036 | Potato | nucleus | 55.61 | 57.0 |
| AT1G11650.2 | Thale cress | nucleus | 56.1 | 56.79 |
| Solyc10g005260.2.1 | Tomato | nucleus | 56.83 | 56.69 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 56.34 | 55.93 |
| CDY34835 | Canola | nucleus | 53.17 | 55.47 |
| PGSC0003DMT400042504 | Potato | nucleus | 55.85 | 55.45 |
| Bra031774.1-P | Field mustard | nucleus | 52.44 | 54.57 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 44.15 | 52.92 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 57.32 | 50.65 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 52.44 | 47.05 |
| TraesCS2D01G315400.2 | Wheat | plastid | 45.85 | 44.34 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 44.15 | 43.41 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 52.93 | 42.8 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 35.12 | 40.45 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 22.68 | 21.83 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 23.17 | 21.25 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 20.73 | 18.93 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 16.34 | 15.06 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 13.41 | 14.95 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 22.93 | 14.16 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 21.46 | 13.79 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 8.29 | 13.65 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 21.46 | 13.52 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 20.98 | 13.17 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 19.51 | 8.37 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 19.76 | 8.35 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 20.0 | 8.0 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.71 | 5.6 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF3 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS6D01G081700 | EnsemblPlants:TraesCS6D01G081700.2 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6D:+:47256760..47261298
Molecular Weight (calculated)
45085.1 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.553
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPQPQPGVA PPQWGAIPPP MPPHHLYAPP PPQMWGQPLP PQQAAYYGRP AAPTQAPAGH NEVRTLWLGD LQYWMDENYV YNCFASTGEV QSVKLIRDKQ
101: TGQLQGYGFI EFTSRAGAER VLQTFNGAMM PNVEMAYRLN WATAGEKHDD GADYTIFVGD LAADVTDYIL QETFRLRYPS VKGAKVVTDK LTMRPKGYGF
201: VKFGDPTEQT RAMTEMNGML CSSRPMRIGQ AANKQKATGV QEKVPSSQGV QTDNDPSNST IFVGGLDPNA TEDVLKQVFT PYGDVVHVKI PVGKRCGFVQ
301: YASRFSAEEA LLMLQGTMIG GQNVRLSWGR SPSNKQVQSQ QDFNHWGGAT ANAGYYGYGQ GYGAYGYATQ PQDPNMYGYG TYAGYPNYPQ QVAQQPQQEP
401: VKSSLSVDAV
101: TGQLQGYGFI EFTSRAGAER VLQTFNGAMM PNVEMAYRLN WATAGEKHDD GADYTIFVGD LAADVTDYIL QETFRLRYPS VKGAKVVTDK LTMRPKGYGF
201: VKFGDPTEQT RAMTEMNGML CSSRPMRIGQ AANKQKATGV QEKVPSSQGV QTDNDPSNST IFVGGLDPNA TEDVLKQVFT PYGDVVHVKI PVGKRCGFVQ
301: YASRFSAEEA LLMLQGTMIG GQNVRLSWGR SPSNKQVQSQ QDFNHWGGAT ANAGYYGYGQ GYGAYGYATQ PQDPNMYGYG TYAGYPNYPQ QVAQQPQQEP
401: VKSSLSVDAV
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.