Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 46.74 | 83.53 |
| TraesCS3A01G076800.1 | Wheat | mitochondrion, nucleus, plasma membrane, plastid | 87.64 | 69.89 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 86.52 | 61.6 |
| EER89984 | Sorghum | plastid | 53.03 | 37.4 |
| Zm00001d046487_P001 | Maize | cytosol | 53.48 | 37.01 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 44.94 | 31.35 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 45.17 | 30.88 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 44.94 | 30.12 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 26.52 | 29.57 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 37.08 | 25.27 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 14.83 | 19.3 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 15.51 | 18.75 |
| TraesCS6D01G081700.2 | Wheat | plastid | 15.06 | 16.34 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 12.81 | 16.01 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 15.28 | 15.96 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 15.96 | 15.81 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 16.4 | 15.73 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 14.38 | 15.35 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 14.61 | 14.91 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 15.28 | 14.88 |
| TraesCS2D01G315400.2 | Wheat | plastid | 13.93 | 14.62 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 13.71 | 13.65 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 16.18 | 7.42 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 15.06 | 7.01 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 15.28 | 6.63 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G076700.1 | EnsemblPlantsGene:TraesCS3D01G076700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12378 | MapMan:17.4.2.5 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:37243950..37250463
Molecular Weight (calculated)
49740.4 Da
IEP (calculated)
9.576
GRAVY (calculated)
-0.333
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRPLLAPA VTLRPPGPAL GSRASLYVGD LDDGVAEGHL YALFCKVAPV ASLRICRDVI GRSLGYAYVN FYSREDAKRA LDSLNFTPAN GKHIRVMFSN
101: RDPTLRLSGK ANIFIKNLVP NIDGKSLSDM FGRYGTILSC KGFVQFSEET SANDAIDSLN GKLVNGKRIF VGLFIRRQER QPNISVSNYT NVYVKNLPKG
201: FTHNDLLQEF GPFGTITSAV IMRDNDGISK CFGFVNYGES ECAAEAVKSL NGKMIKDTIL YVGRAQKKSE REAELRENFE RARNEKFKKF EGLNLYVKNL
301: DDSINDLNLR GLFEFFGEIG SCKVMVDSQG RSQGYGFVSF TTIEAVHKAV SNIVGKKPLY VGVAQRKEER RAMLVVSLNC YFPSDHFHFT PWVPSGMTPY
401: TYNMPRPLHH AWRDAWKKLV KNSEAYNVES VSFSSTTSND KNNDP
101: RDPTLRLSGK ANIFIKNLVP NIDGKSLSDM FGRYGTILSC KGFVQFSEET SANDAIDSLN GKLVNGKRIF VGLFIRRQER QPNISVSNYT NVYVKNLPKG
201: FTHNDLLQEF GPFGTITSAV IMRDNDGISK CFGFVNYGES ECAAEAVKSL NGKMIKDTIL YVGRAQKKSE REAELRENFE RARNEKFKKF EGLNLYVKNL
301: DDSINDLNLR GLFEFFGEIG SCKVMVDSQG RSQGYGFVSF TTIEAVHKAV SNIVGKKPLY VGVAQRKEER RAMLVVSLNC YFPSDHFHFT PWVPSGMTPY
401: TYNMPRPLHH AWRDAWKKLV KNSEAYNVES VSFSSTTSND KNNDP
001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
Arabidopsis Description
PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.