Factsheet for TraesCS5D01G167000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G229400.1
TraesCS4B01G087000.1
TraesCS4D01G084200.1
TraesCS5A01G115200.1
TraesCS5B01G121000.2
TraesCS5D01G126900.3
TraesCS7A01G265700.1
TraesCS7B01G166700.1
TraesCS7D01G269000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	TraesCS4A01G229400.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4B01G087000.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4D01G084200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5A01G115200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5B01G121000.2	AT2G43970.1	21798944
AT4G34110.1	TraesCS5D01G126900.3	AT2G43970.1	21798944
AT4G34110.1	TraesCS7A01G265700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7B01G166700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7D01G269000.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G159400.1	Wheat	cytosol	99.85	99.85
TraesCS5A01G161800.2	Wheat	nucleus	99.54	99.54
HORVU5Hr1G050560.1	Barley	plastid	99.54	92.31
Os09t0115400-01	Rice	nucleus	90.17	88.67
KXG35258	Sorghum	cytosol	82.33	81.71
Zm00001d005276_P007	Maize	cytosol	81.26	80.89
Zm00001d019824_P004	Maize	cytosol	81.26	80.64
TraesCS7D01G287900.1	Wheat	cytosol	76.19	77.74
VIT_18s0001g10170.t01	Wine grape	cytosol	69.12	70.31
GSMUA_Achr4P20270_001	Banana	cytosol	68.66	69.52
KRH70673	Soybean	nucleus	68.82	69.14
CDY67364	Canola	nucleus	30.88	68.6
KRH50336	Soybean	cytosol	68.51	68.51
VIT_07s0031g00210.t01	Wine grape	cytosol	68.82	68.5
KRH15385	Soybean	nucleus	67.59	67.48
Bra013104.1-P	Field mustard	cytosol	63.75	67.37
KRH05656	Soybean	endoplasmic reticulum, nucleus	67.13	66.82
CDX89664	Canola	cytosol	62.98	66.78
CDY54068	Canola	cytosol	66.97	66.77
CDY51045	Canola	cytosol	66.67	66.46
Bra018797.1-P	Field mustard	cytosol	66.67	66.46
AT1G49760.1	Thale cress	cytosol	67.28	65.28
KRH52023	Soybean	cytosol, endoplasmic reticulum	63.13	65.24
TraesCS2D01G358000.1	Wheat	cytosol	66.36	65.06
CDX71223	Canola	cytosol	63.44	64.73
Bra011488.1-P	Field mustard	cytosol, plastid	60.83	64.6
CDX69025	Canola	nucleus, plastid	60.52	64.48
CDY51957	Canola	cytosol, plastid	61.29	64.46
KRH61326	Soybean	cytosol, endoplasmic reticulum	62.37	64.44
CDY62723	Canola	cytosol	60.98	64.34
Bra034603.1-P	Field mustard	cytosol, plastid	61.14	64.3
CDX75397	Canola	nucleus, plastid	60.83	64.29
AT4G34110.1	Thale cress	cytosol	61.75	63.91
CDY36634	Canola	nucleus	62.37	62.56
Bra015220.1-P	Field mustard	cytosol	55.45	62.46
CDY67365	Canola	plastid	27.96	62.33
CDX79296	Canola	plastid	16.59	59.02
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	68.51	56.67
PGSC0003DMT400012508	Potato	nucleus	10.6	55.65
TraesCS3D01G076800.1	Wheat	mitochondrion	19.66	51.41
GSMUA_Achr7P05430_001	Banana	nucleus	70.66	50.88
TraesCS3D01G076700.1	Wheat	mitochondrion	30.88	45.17
Bra022413.1-P	Field mustard	cytosol	30.57	44.62
CDX92325	Canola	nucleus	19.51	39.44
TraesCS4D01G205700.1	Wheat	cytosol	39.02	38.9
CDX91689	Canola	nucleus	15.82	33.77
TraesCS1D01G142300.1	Wheat	nucleus	15.82	27.99
TraesCS5D01G250100.1	Wheat	nucleus	13.67	26.02
TraesCS2D01G176700.1	Wheat	nucleus	14.13	21.6
TraesCS6D01G081700.2	Wheat	plastid	13.52	21.46
TraesCS2D01G266400.1	Wheat	nucleus	11.67	21.35
TraesCS2D01G472700.1	Wheat	nucleus	14.29	21.33
TraesCS4D01G288600.1	Wheat	nucleus	14.59	20.79
TraesCS2D01G315400.2	Wheat	plastid	13.06	20.05
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	12.75	19.9
Solyc06g062680.1.1	Tomato	cytosol	15.67	19.21
TraesCS2D01G227900.5	Wheat	nucleus	13.67	19.18
TraesCS4D01G150600.2	Wheat	nucleus	13.06	18.93
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	12.6	18.34
TraesCS2D01G593700.1	Wheat	nucleus	15.51	10.41
TraesCS2D01G594800.1	Wheat	nucleus	14.59	9.94
TraesCS2D01G593900.1	Wheat	nucleus	14.13	8.98

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
EnsemblPlantsGene:TraesCS5D01G167000	EnsemblPlants:TraesCS5D01G167000.1	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:260488660..260493039

Molecular Weight (calculated)

70774.6 Da

IEP (calculated)

7.448

GRAVY (calculated)

-0.428

Length

651 amino acids

Sequence
(BLAST)

001: MAAQAASSAS EGGSPAAAAA AAAAAASSFP ATSLYVGDLD VSVQDAQLFD VFAQIGGVVS VRVCRDVTSR KSLGYAYVNY NTPADAARAL EMLNFTPING
101: RPIRIMYSNR DPSLRKSGTA NIFIKNLDKS IDNKALYDTF CVFGNILSCK VATDPAGESK GYGFVQYERD EAAHAAIEKL NGMLMNDKKV YVGPFVRKQE
201: RDNSPGNVKF NNVYVKNLAE TTTEDDLKEI FGKFGAITSV VVMRDGDGRS KCFGFVNFES PDEAALAVQD LNGKKFSDKE WYVGRAQKKS EREMELKEKF
301: EKNLQEAADK YQNTNLYLKN LDDTVDDEKL RELFAEFGTI TSCKVMRDSN GASRGSGFVA FKSADDASRA LAEMNNKMVG NKPLYVALAQ RKEDRKARLQ
401: AQFSQMRPVP MAQTVGPRMQ MLPPGVPVGQ QMFYGQPPAF INPQPGFGFQ QPFMPGMRPG GAPMPNFMMP MVQQGQQPQR PAGRRAGAGG MQQSMQMGQQ
501: QMMGRGGGRG YRYPTGRGMP DPAMHGVGGV MTSPYEMGGM PMRDAGASQP VPIGALASAL ANSPPETQRM MLGENLYPLV DQLEHDQAAK VTGMLLEMDQ
601: TEVLHLLESP DALKAKVAEA MEVLRSAQQH TNQSPEQQLA SLSLNDGLIS S

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.