CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79791
CDY01209
CDY01210
CDY12749
CDY17896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	CDX79791	AT2G43970.1	21798944
AT4G34110.1	CDY17896	AT2G43970.1	21798944
AT4G34110.1	CDY01209	AT4G14270.1	21798944
AT4G34110.1	CDY01210	AT4G14270.1	21798944
AT4G34110.1	CDY12749	AT4G14270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011488.1-P	Field mustard	cytosol, plastid	96.75	97.23
CDX69025	Canola	nucleus, plastid	96.27	97.05
CDX79295	Canola	cytosol, plastid	15.58	96.0
CDX79296	Canola	plastid	27.27	91.8
CDY62723	Canola	cytosol	89.45	89.3
CDY51957	Canola	cytosol, plastid	89.29	88.85
CDY08990	Canola	cytosol	14.12	87.88
AT4G34110.1	Thale cress	cytosol	87.66	85.85
CDX89664	Canola	cytosol	81.01	81.27
CDY67364	Canola	nucleus	37.82	79.52
CDX71223	Canola	cytosol	82.31	79.47
CDY67365	Canola	plastid	37.34	78.77
CDY36634	Canola	nucleus	80.68	76.58
KRH70673	Soybean	nucleus	74.35	70.68
KRH50336	Soybean	cytosol	74.35	70.35
CDY54068	Canola	cytosol	72.89	68.76
CDY51045	Canola	cytosol	72.73	68.61
CDY37229	Canola	cytosol	23.7	68.54
PGSC0003DMT400066245	Potato	extracellular	71.27	68.27
Solyc01g107870.2.1	Tomato	extracellular	71.27	68.27
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	63.15	63.67
GSMUA_Achr9P00990_001	Banana	cytosol	66.07	62.52
TraesCS7D01G287900.1	Wheat	cytosol	63.96	61.76
GSMUA_Achr4P09890_001	Banana	cytosol	65.26	61.66
GSMUA_AchrUn_...	Banana	cytosol	65.1	61.5
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	65.1	61.5
TraesCS2D01G358000.1	Wheat	cytosol	66.23	61.45
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	65.75	61.36
TraesCS2A01G359000.1	Wheat	cytosol	66.23	61.35
TraesCS2B01G378400.1	Wheat	nucleus	66.07	61.2
Os09t0115400-01	Rice	nucleus	65.75	61.18
Os04t0504800-01	Rice	plasma membrane	65.1	60.85
TraesCS5A01G161800.2	Wheat	nucleus	64.29	60.83
TraesCS5B01G159400.1	Wheat	cytosol	64.29	60.83
TraesCS5D01G167000.1	Wheat	nucleus, unclear	64.29	60.83
Zm00001d025801_P005	Maize	cytosol, plastid	64.29	60.74
CDX89562	Canola	nucleus	63.47	60.62
EES12460	Sorghum	plastid	65.1	60.39
KXG35258	Sorghum	cytosol	64.29	60.37
TraesCS7A01G288700.1	Wheat	nucleus	64.77	60.27
CDY38939	Canola	nucleus	62.82	60.09
GSMUA_Achr4P20270_001	Banana	cytosol	62.66	60.03
Zm00001d019824_P004	Maize	cytosol	63.8	59.91
Zm00001d005276_P007	Maize	cytosol	63.31	59.63
CDY46079	Canola	nucleus	60.55	59.3
CDY67921	Canola	nucleus	61.36	58.6
HORVU5Hr1G050560.1	Barley	plastid	64.45	56.55
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	64.77	55.73
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	70.78	55.4
TraesCS7B01G182800.3	Wheat	cytosol	60.23	54.96
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	53.57	50.93
CDY72408	Canola	plastid	7.47	49.46
CDY41472	Canola	cytosol, plastid	50.81	48.83
CDY37935	Canola	nucleus	50.32	47.62
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	49.68	47.22
CDY03685	Canola	nucleus	49.19	47.12
CDX72826	Canola	plastid	51.95	46.78
CDX96344	Canola	plastid	51.95	46.78
CDY36684	Canola	plastid	49.84	46.17
GSMUA_Achr7P05430_001	Banana	nucleus	66.23	45.13
CDX92325	Canola	nucleus	22.89	43.79
CDY57754	Canola	nucleus	13.64	39.44
CDY33264	Canola	mitochondrion, nucleus	12.66	39.0
CDY30168	Canola	cytosol	30.68	35.13
CDY56198	Canola	cytosol	27.44	34.56
CDX91689	Canola	nucleus	17.05	34.43
CDY06734	Canola	mitochondrion	13.8	27.87
CDY59539	Canola	nucleus	16.23	27.32
CDY66740	Canola	nucleus	16.72	27.03
CDY67617	Canola	nucleus	16.72	27.03
CDY43894	Canola	nucleus	15.91	26.92
CDY13992	Canola	nucleus	18.02	26.49
CDX92537	Canola	nucleus	17.53	25.78
CDX70874	Canola	cytosol, nucleus, peroxisome	17.86	25.58
CDY34835	Canola	nucleus	16.07	25.19
CDX88893	Canola	cytosol, nucleus, peroxisome	17.53	25.12
CDY17286	Canola	nucleus	16.23	24.69
CDX89287	Canola	nucleus	16.23	24.15
CDY19874	Canola	nucleus	16.23	23.87
CDY29263	Canola	nucleus	16.07	23.63
CDY14290	Canola	nucleus	15.91	23.5
CDX92786	Canola	mitochondrion, nucleus, peroxisome	16.23	23.47
CDX95176	Canola	nucleus	15.91	23.39
CDY61476	Canola	nucleus	15.91	23.39
CDY02486	Canola	nucleus	15.91	23.33
CDY46671	Canola	nucleus	16.23	23.31
CDY63384	Canola	mitochondrion, nucleus	15.75	23.21
CDY52067	Canola	nucleus	15.58	22.91
CDY51403	Canola	nucleus	15.58	22.86
CDY33092	Canola	nucleus	15.75	22.82
CDY66423	Canola	nucleus	15.58	22.54
CDY68866	Canola	nucleus	15.1	22.41
CDY29341	Canola	nucleus	14.94	21.96
CDY16528	Canola	nucleus	15.1	21.93
CDY32840	Canola	nucleus	14.94	21.85
CDY22988	Canola	nucleus	14.77	21.67
CDY50959	Canola	nucleus	15.1	21.63
CDY28101	Canola	nucleus	14.94	21.45
CDX95462	Canola	nucleus	15.1	21.43
CDY18570	Canola	nucleus	15.1	21.43
CDX82310	Canola	nucleus	14.29	21.36
CDX99265	Canola	nucleus	14.61	21.23
CDX92304	Canola	nucleus	14.29	20.75
CDY34639	Canola	nucleus, plastid, vacuole	16.23	19.72
CDX81822	Canola	mitochondrion, nucleus	16.23	18.35

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:A0A078CF30	EnsemblPlants:CDX75397	ProteinID:CDX75397
ProteinID:CDX75397.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00121283001
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004EE6648	SEG:seg

Description

BnaA01g03050D

Coordinates

chrLK031804:+:942383..945962

Molecular Weight (calculated)

67519.1 Da

IEP (calculated)

6.303

GRAVY (calculated)

-0.480

Length

616 amino acids

Sequence
(BLAST)

001: MAQVQTTVAP ATQFGTTSLY VGDLDLNVTD SQLFEAFSQM GQVVSVRVCR DSATRRSLGY GYVNFTNPPD AARAIQELNY IPLYGKPIRV MYSHRDPSVR
101: LSGAGNIFIK NLDQSIDHKA LHDTFSTFGN IVSCKVAVDA SGQSKGYGFV QYADEESAQK AIEKLNGMLL NDKQVYVGPF LRRQERDSTA NKTKFTNVYV
201: KNLAESTTDD DLKSAFAEYG EITSAVVMKD GEGGKSKGFG FVNFENADDA AKAVESLNGK MFDDKEWYVG RAQKKSERET ELRVRREESL REAAERFQSS
301: NLYVKNLDSS VSDETLKEMF SPFGTVTSCK VMRDPSGISK GSGFVAFSTP EEATEAMSQM SGKMVEGKPL YVAIAQRKED RRVRLQAQFS QVRPVAMPSS
401: AGPRMPMFPP GGPGIGQQMF YGQAPPNMIP PQPGYGYQQQ LVPGMRPGGR GPVPNYFMPM VQQQQQRPGG GRRPGGIQQS QHQFDCMIWV GDQMHPRGRM
501: LRYSQGRGSG GDVAPYDMGN NNITMPIGAL ASNLANASPE QQRTMLGENL YPLVEQLEAE SAAKVTGMLL EMDQTEVLHL LESPEALKDK VAEAMDVLRS
601: VAAGGAAEQL ASLNLS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.