Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002230.1-P | Field mustard | nucleus | 98.33 | 98.33 |
| CDY13992 | Canola | nucleus | 96.9 | 96.9 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 88.07 | 85.81 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 87.59 | 85.35 |
| AT5G19350.1 | Thale cress | cytosol | 85.92 | 84.71 |
| KRH29709 | Soybean | cytosol | 63.01 | 65.84 |
| KRH23136 | Soybean | cytosol | 64.92 | 64.92 |
| KRH24702 | Soybean | nucleus | 61.81 | 64.59 |
| EER95414 | Sorghum | nucleus | 63.96 | 64.58 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 63.96 | 64.42 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 63.48 | 63.94 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 67.78 | 63.82 |
| Solyc11g065880.1.1 | Tomato | nucleus | 63.25 | 63.55 |
| Os03t0174100-02 | Rice | nucleus | 63.01 | 63.46 |
| PGSC0003DMT400018998 | Potato | nucleus | 63.25 | 63.4 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 59.19 | 62.0 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 42.48 | 60.54 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 63.48 | 57.95 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 63.01 | 57.77 |
| CDY34835 | Canola | nucleus | 46.3 | 49.36 |
| CDX89287 | Canola | nucleus | 44.87 | 45.41 |
| CDY06734 | Canola | mitochondrion | 32.7 | 44.92 |
| CDY29263 | Canola | nucleus | 44.87 | 44.87 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 44.87 | 44.13 |
| CDY46671 | Canola | nucleus | 45.11 | 44.06 |
| CDY14290 | Canola | nucleus | 43.2 | 43.41 |
| CDY66423 | Canola | nucleus | 43.68 | 42.96 |
| CDY17286 | Canola | nucleus | 41.29 | 42.72 |
| CDY19874 | Canola | nucleus | 42.0 | 42.0 |
| CDY16528 | Canola | nucleus | 40.81 | 40.33 |
| CDY68866 | Canola | nucleus | 39.86 | 40.24 |
| CDY22988 | Canola | nucleus | 40.33 | 40.24 |
| CDY32840 | Canola | nucleus | 40.33 | 40.14 |
| CDX95176 | Canola | nucleus | 40.1 | 40.1 |
| CDY52067 | Canola | nucleus | 40.1 | 40.1 |
| CDX82310 | Canola | nucleus | 39.38 | 40.05 |
| CDX99265 | Canola | nucleus | 40.33 | 39.86 |
| CDY50959 | Canola | nucleus | 40.81 | 39.77 |
| CDX92304 | Canola | nucleus | 40.1 | 39.62 |
| CDY29341 | Canola | nucleus | 39.62 | 39.62 |
| CDY28101 | Canola | nucleus | 40.33 | 39.39 |
| CDY18570 | Canola | nucleus | 40.1 | 38.71 |
| CDX95462 | Canola | nucleus | 39.86 | 38.48 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.82 | 37.87 |
| Zm00001d027869_P002 | Maize | nucleus | 52.03 | 28.57 |
| CDY63384 | Canola | mitochondrion, nucleus | 22.67 | 22.73 |
| CDY61476 | Canola | nucleus | 22.43 | 22.43 |
| CDY02486 | Canola | nucleus | 22.43 | 22.38 |
| CDY51403 | Canola | nucleus | 22.43 | 22.38 |
| CDY33092 | Canola | nucleus | 22.67 | 22.35 |
| CDY67365 | Canola | plastid | 14.56 | 20.89 |
| CDX81822 | Canola | mitochondrion, nucleus | 24.11 | 18.53 |
| CDY59539 | Canola | nucleus | 15.51 | 17.76 |
| CDX75397 | Canola | nucleus, plastid | 25.78 | 17.53 |
| CDX69025 | Canola | nucleus, plastid | 25.54 | 17.51 |
| CDY62723 | Canola | cytosol | 25.78 | 17.5 |
| CDY51957 | Canola | cytosol, plastid | 25.78 | 17.45 |
| CDY43894 | Canola | nucleus | 15.04 | 17.31 |
| CDY72408 | Canola | plastid | 3.82 | 17.2 |
| CDX89664 | Canola | cytosol | 24.82 | 16.94 |
| CDY67617 | Canola | nucleus | 15.27 | 16.8 |
| CDY66740 | Canola | nucleus | 15.27 | 16.8 |
| CDX71223 | Canola | cytosol | 25.3 | 16.61 |
| CDY36634 | Canola | nucleus | 23.87 | 15.41 |
| CDX89562 | Canola | nucleus | 23.63 | 15.35 |
| CDX79296 | Canola | plastid | 6.68 | 15.3 |
| CDY38939 | Canola | nucleus | 23.39 | 15.22 |
| CDY54068 | Canola | cytosol | 23.39 | 15.01 |
| CDY51045 | Canola | cytosol | 23.15 | 14.85 |
| CDY41472 | Canola | cytosol, plastid | 22.43 | 14.66 |
| CDY46079 | Canola | nucleus | 21.96 | 14.63 |
| CDY67921 | Canola | nucleus | 22.43 | 14.57 |
| CDY03685 | Canola | nucleus | 21.72 | 14.15 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.24 | 13.73 |
| CDY36684 | Canola | plastid | 21.72 | 13.68 |
| CDY37935 | Canola | nucleus | 21.24 | 13.67 |
| CDX96344 | Canola | plastid | 22.2 | 13.6 |
| CDX72826 | Canola | plastid | 22.2 | 13.6 |
| CDY56198 | Canola | cytosol | 15.75 | 13.5 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.21 | 13.0 |
| CDY30168 | Canola | cytosol | 16.47 | 12.83 |
| CDY57754 | Canola | nucleus | 6.21 | 12.21 |
| CDY67364 | Canola | nucleus | 8.11 | 11.6 |
| CDX92325 | Canola | nucleus | 7.64 | 9.94 |
| CDY37229 | Canola | cytosol | 4.53 | 8.92 |
| CDY08990 | Canola | cytosol | 1.91 | 8.08 |
| CDX79295 | Canola | cytosol, plastid | 1.91 | 8.0 |
| CDX91689 | Canola | nucleus | 5.25 | 7.21 |
Protein Annotations
| EnsemblPlants:CDX92537 | EnsemblPlantsGene:GSBRNA2T00154320001 | Gene3D:3.30.70.330 | GO:A0A078DUI7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX92537 | ProteinID:CDX92537.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6CD7 | MapMan:16.9.4 | : |
Description
BnaA10g15760D
Coordinates
chrLK031872:-:1111680..1114398
Molecular Weight (calculated)
45895.4 Da
IEP (calculated)
4.797
GRAVY (calculated)
-0.463
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTMMPPQPQ GYHHPQTLEE VRTLWIGDLQ YWVDENYLSS CFSQTGELVS VKVIRNKITG QPEGYGFIEF ISHAAAERTL QTYNGTPMPG TEINFRLNWA
101: SFGSGQKVDP GTDHSIFVGD LAPDVTDYLL QETFRVHYSS VRGAKVVTDP STGRSKGYGF VKFAEESERN RAMAEMNGLY CSTRPMRISA ATPKKTVGLQ
201: QPYAAKAAYP VPAPSAVAAA VPAYAAQPAQ VLAPENDITC TTVSIADLDP NVTEEELKNA FSPLGEVIYV NIPETKGYGY VQFKTRTSAE EAMQNMQGHV
301: IGQQAVRISW SKNPGQDGYA TQADPNQWSG YYGYGQGYDA YAYGTAQDPS VYAYGGYGYP QYPQQGDGTQ EVTNSAAEQD LYDPMATPDV DKLNAGYFSV
401: HASAILGRLS WHRTSPLAS
101: SFGSGQKVDP GTDHSIFVGD LAPDVTDYLL QETFRVHYSS VRGAKVVTDP STGRSKGYGF VKFAEESERN RAMAEMNGLY CSTRPMRISA ATPKKTVGLQ
201: QPYAAKAAYP VPAPSAVAAA VPAYAAQPAQ VLAPENDITC TTVSIADLDP NVTEEELKNA FSPLGEVIYV NIPETKGYGY VQFKTRTSAE EAMQNMQGHV
301: IGQQAVRISW SKNPGQDGYA TQADPNQWSG YYGYGQGYDA YAYGTAQDPS VYAYGGYGYP QYPQQGDGTQ EVTNSAAEQD LYDPMATPDV DKLNAGYFSV
401: HASAILGRLS WHRTSPLAS
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.