Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016118.1-P | Field mustard | plastid | 99.85 | 99.85 |
| CDX72826 | Canola | plastid | 98.98 | 98.98 |
| CDY36684 | Canola | plastid | 85.53 | 87.97 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 81.73 | 86.27 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 85.09 | 85.34 |
| CDY37935 | Canola | nucleus | 80.56 | 84.64 |
| CDY03685 | Canola | nucleus | 75.58 | 80.4 |
| CDY41472 | Canola | cytosol, plastid | 68.57 | 73.17 |
| CDX91689 | Canola | nucleus | 27.05 | 60.66 |
| CDY67365 | Canola | plastid | 23.68 | 55.48 |
| PGSC0003DMT400064531 | Potato | cytosol | 43.13 | 55.45 |
| CDX79295 | Canola | cytosol, plastid | 7.89 | 54.0 |
| CDY08990 | Canola | cytosol | 7.75 | 53.54 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 51.32 | 53.26 |
| KRG91724 | Soybean | cytosol | 50.29 | 52.76 |
| CDX75397 | Canola | nucleus, plastid | 46.78 | 51.95 |
| CDX69025 | Canola | nucleus, plastid | 46.34 | 51.88 |
| CDY51957 | Canola | cytosol, plastid | 46.93 | 51.86 |
| CDY62723 | Canola | cytosol | 46.64 | 51.7 |
| CDX89664 | Canola | cytosol | 45.76 | 50.98 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 49.56 | 50.9 |
| KRH08608 | Soybean | endoplasmic reticulum | 48.68 | 50.0 |
| CDY54068 | Canola | cytosol | 47.37 | 49.62 |
| CDY51045 | Canola | cytosol | 47.22 | 49.46 |
| KRH70233 | Soybean | cytosol | 45.47 | 49.44 |
| CDX71223 | Canola | cytosol | 45.91 | 49.22 |
| CDY46079 | Canola | nucleus | 45.18 | 49.13 |
| CDY38939 | Canola | nucleus | 45.76 | 48.6 |
| CDX89562 | Canola | nucleus | 45.76 | 48.53 |
| CDY36634 | Canola | nucleus | 45.61 | 48.07 |
| CDY67921 | Canola | nucleus | 45.03 | 47.75 |
| CDY72408 | Canola | plastid | 6.43 | 47.31 |
| CDY67364 | Canola | nucleus | 19.3 | 45.05 |
| CDX79296 | Canola | plastid | 10.82 | 40.44 |
| CDY33264 | Canola | mitochondrion, nucleus | 11.4 | 39.0 |
| CDY57754 | Canola | nucleus | 12.13 | 38.97 |
| CDY37229 | Canola | cytosol | 11.26 | 36.15 |
| CDX92325 | Canola | nucleus | 16.81 | 35.71 |
| CDY30168 | Canola | cytosol | 27.19 | 34.57 |
| CDY56198 | Canola | cytosol | 23.83 | 33.33 |
| CDY43894 | Canola | nucleus | 13.45 | 25.27 |
| CDY59539 | Canola | nucleus | 13.45 | 25.14 |
| CDY67617 | Canola | nucleus | 13.89 | 24.93 |
| CDY66740 | Canola | nucleus | 13.89 | 24.93 |
| CDY06734 | Canola | mitochondrion | 11.11 | 24.92 |
| CDY17286 | Canola | nucleus | 13.6 | 22.96 |
| CDY13992 | Canola | nucleus | 13.74 | 22.43 |
| CDX89287 | Canola | nucleus | 13.45 | 22.22 |
| CDX92537 | Canola | nucleus | 13.6 | 22.2 |
| CDY19874 | Canola | nucleus | 13.6 | 22.2 |
| CDY29263 | Canola | nucleus | 13.45 | 21.96 |
| CDY46671 | Canola | nucleus | 13.74 | 21.91 |
| CDY34835 | Canola | nucleus | 12.57 | 21.88 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 13.6 | 21.83 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 13.6 | 21.63 |
| CDY14290 | Canola | nucleus | 13.16 | 21.58 |
| CDY16528 | Canola | nucleus | 13.3 | 21.46 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 13.45 | 21.4 |
| CDY32840 | Canola | nucleus | 13.16 | 21.38 |
| CDX99265 | Canola | nucleus | 13.16 | 21.23 |
| CDY18570 | Canola | nucleus | 13.45 | 21.2 |
| CDY22988 | Canola | nucleus | 13.01 | 21.19 |
| CDY66423 | Canola | nucleus | 13.16 | 21.13 |
| CDX82310 | Canola | nucleus | 12.72 | 21.12 |
| CDY29341 | Canola | nucleus | 12.87 | 21.0 |
| CDX95176 | Canola | nucleus | 12.72 | 20.76 |
| CDY52067 | Canola | nucleus | 12.72 | 20.76 |
| CDX92304 | Canola | nucleus | 12.87 | 20.75 |
| CDX95462 | Canola | nucleus | 13.16 | 20.74 |
| CDY50959 | Canola | nucleus | 13.01 | 20.7 |
| CDY61476 | Canola | nucleus | 12.57 | 20.53 |
| CDY28101 | Canola | nucleus | 12.87 | 20.51 |
| CDY68866 | Canola | nucleus | 12.43 | 20.48 |
| CDY02486 | Canola | nucleus | 12.57 | 20.48 |
| CDY33092 | Canola | nucleus | 12.57 | 20.24 |
| CDY63384 | Canola | mitochondrion, nucleus | 12.28 | 20.1 |
| CDY51403 | Canola | nucleus | 12.28 | 20.0 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 12.72 | 17.16 |
| CDX81822 | Canola | mitochondrion, nucleus | 12.72 | 15.96 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078E6N9 | EnsemblPlants:CDX96344 | ProteinID:CDX96344 |
| ProteinID:CDX96344.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00102494001 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EE0580 | SEG:seg |
Description
BnaA07g29550D
Coordinates
chrLK031894:-:380871..383743
Molecular Weight (calculated)
74965.8 Da
IEP (calculated)
8.417
GRAVY (calculated)
-0.411
Length
684 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVASGIA PTTAMVDQVP NQPSVTVASP QSTTPFTQVA AVAAAAAAAE ALQAHPNSSL YVGDLDQSVN EAHLLDLFNQ VAPVQTVRVC RDLTRRSLGY
101: AYVNFANPDD AMRAMDSLNY TPIKDRPIRI MRSNRDPSTR LSGKGNVFIK NLDVSIDNKA LYDTFSIFGT ILSCKVAMDV TGRSKGYGFV QFEKEETAEA
201: AIDKLNGMLL NDKQVFVGHF VRRQDRARSE SGTVPRFTNV YVKNLPKEIG DDELKKTFGK YGDISSAVVM KDQSGSSRCF GFVNFESPEA AAVAVEKMNG
301: ISLGEDVLYV GRAQKKSERE EELRRKFELE RISRFEKLQG SNLYLKNLDD SVNDEKLKEM FSEYGNVTSC KVMMNSEGVS RGFGFVAYSC PEEALRAMNE
401: MNGKMIGRKP LYIALAQRKE ERRSHLQTLF SHMRPNGTMS PMASPMPGFH HHPPGGAMAG PHHPMYVGQN GQGLVPSQPM GYGYQLQFMP GVRPGSGPSN
501: FMMPYPLQRQ NQPGPRVGFR RGATNMQQHF QQQQMMQQNA SPGMRYMGGP GNRRNGMEGT APQGIIPLPL DASAISHNAS QNPQKPPLLP ISKLMSALAL
601: ANPASHPQML GEQLYPLVEK QEPVHTAKVT GMLLEMDQAE ILHLLESPEA LKAKVSEALD VLRLSANPPA VSSVDDQFAP SATE
101: AYVNFANPDD AMRAMDSLNY TPIKDRPIRI MRSNRDPSTR LSGKGNVFIK NLDVSIDNKA LYDTFSIFGT ILSCKVAMDV TGRSKGYGFV QFEKEETAEA
201: AIDKLNGMLL NDKQVFVGHF VRRQDRARSE SGTVPRFTNV YVKNLPKEIG DDELKKTFGK YGDISSAVVM KDQSGSSRCF GFVNFESPEA AAVAVEKMNG
301: ISLGEDVLYV GRAQKKSERE EELRRKFELE RISRFEKLQG SNLYLKNLDD SVNDEKLKEM FSEYGNVTSC KVMMNSEGVS RGFGFVAYSC PEEALRAMNE
401: MNGKMIGRKP LYIALAQRKE ERRSHLQTLF SHMRPNGTMS PMASPMPGFH HHPPGGAMAG PHHPMYVGQN GQGLVPSQPM GYGYQLQFMP GVRPGSGPSN
501: FMMPYPLQRQ NQPGPRVGFR RGATNMQQHF QQQQMMQQNA SPGMRYMGGP GNRRNGMEGT APQGIIPLPL DASAISHNAS QNPQKPPLLP ISKLMSALAL
601: ANPASHPQML GEQLYPLVEK QEPVHTAKVT GMLLEMDQAE ILHLLESPEA LKAKVSEALD VLRLSANPPA VSSVDDQFAP SATE
001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
Arabidopsis Description
PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.