Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46671 | Canola | nucleus | 95.54 | 94.87 |
| CDX89287 | Canola | nucleus | 85.92 | 88.41 |
| CDY29263 | Canola | nucleus | 84.27 | 85.68 |
| CDY14290 | Canola | nucleus | 82.86 | 84.65 |
| AT4G27000.1 | Thale cress | nucleus | 81.69 | 83.86 |
| CDY66423 | Canola | nucleus | 82.39 | 82.39 |
| CDY17286 | Canola | nucleus | 69.72 | 73.33 |
| CDY19874 | Canola | nucleus | 70.42 | 71.6 |
| Solyc07g064510.2.1 | Tomato | plastid | 61.74 | 64.15 |
| PGSC0003DMT400057203 | Potato | cytosol | 60.56 | 64.02 |
| CDY34835 | Canola | nucleus | 55.16 | 59.8 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 63.38 | 58.32 |
| CDY06734 | Canola | mitochondrion | 35.21 | 49.18 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 56.1 | 47.14 |
| CDY29341 | Canola | nucleus | 45.07 | 45.82 |
| CDY68866 | Canola | nucleus | 44.6 | 45.78 |
| CDY13992 | Canola | nucleus | 44.84 | 45.58 |
| CDX82310 | Canola | nucleus | 43.9 | 45.39 |
| CDY22988 | Canola | nucleus | 44.6 | 45.24 |
| CDY28101 | Canola | nucleus | 45.54 | 45.22 |
| CDY32840 | Canola | nucleus | 44.37 | 44.89 |
| CDX92537 | Canola | nucleus | 44.13 | 44.87 |
| CDY16528 | Canola | nucleus | 44.37 | 44.58 |
| CDX92304 | Canola | nucleus | 44.37 | 44.58 |
| CDX99265 | Canola | nucleus | 44.37 | 44.58 |
| CDY50959 | Canola | nucleus | 44.84 | 44.42 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 44.84 | 44.42 |
| CDY52067 | Canola | nucleus | 43.66 | 44.39 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 44.6 | 44.19 |
| CDX95176 | Canola | nucleus | 43.19 | 43.91 |
| CDX95462 | Canola | nucleus | 44.6 | 43.78 |
| CDY18570 | Canola | nucleus | 44.6 | 43.78 |
| Zm00001d021149_P001 | Maize | cytosol | 16.9 | 43.64 |
| CDY02486 | Canola | nucleus | 24.88 | 25.24 |
| CDY61476 | Canola | nucleus | 24.65 | 25.06 |
| CDY51403 | Canola | nucleus | 24.65 | 25.0 |
| CDY33092 | Canola | nucleus | 24.88 | 24.94 |
| CDY63384 | Canola | mitochondrion, nucleus | 24.18 | 24.64 |
| CDY67365 | Canola | plastid | 13.15 | 19.18 |
| CDX81822 | Canola | mitochondrion, nucleus | 24.18 | 18.9 |
| CDY59539 | Canola | nucleus | 15.26 | 17.76 |
| CDY43894 | Canola | nucleus | 14.79 | 17.31 |
| CDY66740 | Canola | nucleus | 15.26 | 17.06 |
| CDY67617 | Canola | nucleus | 15.26 | 17.06 |
| CDX69025 | Canola | nucleus, plastid | 23.71 | 16.53 |
| CDX75397 | Canola | nucleus, plastid | 23.47 | 16.23 |
| CDY72408 | Canola | plastid | 3.52 | 16.13 |
| CDY62723 | Canola | cytosol | 23.24 | 16.05 |
| CDY51957 | Canola | cytosol, plastid | 23.24 | 15.99 |
| CDY38939 | Canola | nucleus | 23.47 | 15.53 |
| CDX89664 | Canola | cytosol | 22.3 | 15.47 |
| CDX89562 | Canola | nucleus | 23.24 | 15.35 |
| CDX79296 | Canola | plastid | 6.57 | 15.3 |
| CDY46079 | Canola | nucleus | 22.54 | 15.26 |
| CDX71223 | Canola | cytosol | 22.3 | 14.89 |
| CDY67921 | Canola | nucleus | 22.54 | 14.88 |
| CDY51045 | Canola | cytosol | 22.77 | 14.85 |
| CDY54068 | Canola | cytosol | 22.77 | 14.85 |
| CDY56198 | Canola | cytosol | 16.9 | 14.72 |
| CDY57754 | Canola | nucleus | 7.28 | 14.55 |
| CDY41472 | Canola | cytosol, plastid | 21.6 | 14.35 |
| CDY37935 | Canola | nucleus | 21.6 | 14.13 |
| CDY30168 | Canola | cytosol | 17.61 | 13.94 |
| CDY36634 | Canola | nucleus | 21.13 | 13.87 |
| CDY03685 | Canola | nucleus | 20.89 | 13.84 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.89 | 13.73 |
| CDY36684 | Canola | plastid | 21.36 | 13.68 |
| CDX72826 | Canola | plastid | 21.83 | 13.6 |
| CDX96344 | Canola | plastid | 21.83 | 13.6 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.87 | 12.5 |
| CDY67364 | Canola | nucleus | 6.57 | 9.56 |
| CDY37229 | Canola | cytosol | 4.69 | 9.39 |
| CDX91689 | Canola | nucleus | 4.93 | 6.89 |
| CDX92325 | Canola | nucleus | 5.16 | 6.83 |
| CDY08990 | Canola | cytosol | 0.94 | 4.04 |
| CDX79295 | Canola | cytosol, plastid | 0.94 | 4.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078DU32 | EnsemblPlants:CDX92786 | ProteinID:CDX92786 | ProteinID:CDX92786.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00154611001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF2EF4 | SEG:seg |
Description
BnaC07g40440D
Coordinates
chrLK031873:+:822857..825850
Molecular Weight (calculated)
46087.6 Da
IEP (calculated)
5.614
GRAVY (calculated)
-0.638
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPPPAANG AAAGSGQIPS DQQAYHHHQS WMMQQQQLQG QPPAAWNPQS APSPVQQYGG GSQNPGSAGE IKSLWIGDLQ PWMDEGYLMS IFSITGEVQQ
101: AKVIRNKLTG LTEGYGFIEF VSHAAAERIL QTYNGAQMPN CEQTFRLNWA QLGAGERRQS DGPEHTVFVG DLAPDVTDYV LTETFKAVYS SVKGAKVVTD
201: RATGRSKGYG FVKFGDESEQ IRAMTEMNGQ YCSSRPMRIG PAANKKPLTM QQQPGAYQNT QGNPGEGDPT NTTIFVGALD ESVTEDVLKS VFGQFGELVH
301: VKIPAGKRCG FVQYAIRGCA EQALNSLNGT QLGGQNIRLS WGRTPSNKQT QPEQAQYGGG GGGYYGYPPQ GYEGYGYVPP PQDPNAYYGG YPGAGYGNYQ
401: QPGGYQQHQQ HDVYVVIGAE VPESCL
101: AKVIRNKLTG LTEGYGFIEF VSHAAAERIL QTYNGAQMPN CEQTFRLNWA QLGAGERRQS DGPEHTVFVG DLAPDVTDYV LTETFKAVYS SVKGAKVVTD
201: RATGRSKGYG FVKFGDESEQ IRAMTEMNGQ YCSSRPMRIG PAANKKPLTM QQQPGAYQNT QGNPGEGDPT NTTIFVGALD ESVTEDVLKS VFGQFGELVH
301: VKIPAGKRCG FVQYAIRGCA EQALNSLNGT QLGGQNIRLS WGRTPSNKQT QPEQAQYGGG GGGYYGYPPQ GYEGYGYVPP PQDPNAYYGG YPGAGYGNYQ
401: QPGGYQQHQQ HDVYVVIGAE VPESCL
001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
Arabidopsis Description
RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.