Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008613.1-P | Field mustard | nucleus | 88.52 | 92.78 |
| CDY67252 | Canola | nucleus | 91.48 | 70.81 |
| CDX69443 | Canola | nucleus | 90.16 | 69.97 |
| CDY38105 | Canola | nucleus | 82.3 | 63.07 |
| CDX85500 | Canola | nucleus | 80.98 | 61.9 |
| CDX70701 | Canola | nucleus | 78.03 | 61.82 |
| CDX78699 | Canola | nucleus | 77.05 | 60.88 |
| AT5G16560.1 | Thale cress | nucleus | 79.02 | 59.8 |
| CDY71094 | Canola | mitochondrion | 13.44 | 51.25 |
| CDY69225 | Canola | mitochondrion | 20.98 | 38.79 |
| CDY68011 | Canola | nucleus | 26.23 | 37.91 |
| CDX84102 | Canola | nucleus | 29.84 | 33.58 |
| CDY35557 | Canola | nucleus | 35.41 | 32.34 |
| CDX93847 | Canola | nucleus | 35.74 | 32.25 |
| Solyc06g066340.2.1 | Tomato | nucleus | 30.49 | 31.96 |
| CDY01293 | Canola | nucleus | 36.07 | 31.79 |
| CDY43006 | Canola | nucleus | 35.41 | 31.76 |
| CDY23916 | Canola | nucleus | 27.54 | 31.58 |
| VIT_04s0043g00340.t01 | Wine grape | nucleus | 46.56 | 30.41 |
| CDX78794 | Canola | nucleus | 29.84 | 29.17 |
| PGSC0003DMT400043200 | Potato | nucleus | 36.39 | 27.89 |
| GSMUA_Achr4P04510_001 | Banana | nucleus | 34.1 | 27.73 |
| CDY54255 | Canola | nucleus | 26.89 | 27.42 |
| KRH39002 | Soybean | nucleus | 34.1 | 25.24 |
| Os08t0426866-00 | Rice | nucleus | 38.69 | 25.21 |
| KRH48713 | Soybean | nucleus | 34.1 | 25.0 |
| CDY00733 | Canola | mitochondrion, nucleus | 11.48 | 24.65 |
| KXG25180 | Sorghum | nucleus | 38.03 | 24.42 |
| Zm00001d032249_P002 | Maize | plastid | 37.38 | 23.65 |
| CDY16660 | Canola | mitochondrion | 11.8 | 20.81 |
| CDX97319 | Canola | mitochondrion | 13.77 | 20.29 |
| CDX94559 | Canola | mitochondrion | 11.15 | 19.65 |
| CDY45272 | Canola | nucleus | 15.41 | 19.03 |
| CDY41090 | Canola | nucleus | 15.08 | 18.62 |
| CDY59419 | Canola | nucleus | 14.43 | 18.33 |
| CDX81654 | Canola | nucleus | 14.43 | 18.18 |
| CDX82805 | Canola | nucleus | 14.43 | 18.18 |
| CDY09392 | Canola | nucleus | 15.08 | 17.56 |
| CDY70922 | Canola | nucleus | 14.75 | 17.37 |
| CDY17443 | Canola | nucleus | 14.75 | 17.05 |
| CDY17617 | Canola | nucleus | 14.43 | 16.92 |
| CDY04115 | Canola | nucleus | 13.11 | 14.76 |
| CDY02401 | Canola | nucleus | 27.54 | 13.46 |
| CDX74898 | Canola | nucleus | 14.75 | 13.16 |
| CDY42825 | Canola | nucleus | 14.1 | 13.15 |
| CDY67147 | Canola | nucleus | 14.1 | 13.15 |
| CDX91442 | Canola | nucleus | 14.75 | 12.86 |
| CDX74803 | Canola | nucleus | 15.74 | 12.5 |
| CDY52431 | Canola | nucleus | 15.41 | 12.08 |
| CDY18860 | Canola | nucleus | 15.74 | 11.79 |
| CDY07612 | Canola | nucleus | 15.08 | 11.73 |
| CDY07070 | Canola | nucleus | 15.41 | 11.3 |
| CDX93206 | Canola | nucleus | 15.41 | 11.24 |
| CDY04116 | Canola | nucleus | 4.59 | 6.9 |
| CDY69675 | Canola | cytosol, nucleus | 0.66 | 1.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078GU04 | UniProt:A0A078GU04 | EnsemblPlants:CDY28659 | ProteinID:CDY28659 |
| ProteinID:CDY28659.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00040729001 | InterPro:Homeobox-like_sf |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PANTHER:PTHR31496 | PANTHER:PTHR31496:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0004EF3C99 | SEG:seg | : | : | : |
Description
BnaC09g32160DBnaC09g32160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU04]
Coordinates
chrLK032224:-:505409..507560
Molecular Weight (calculated)
34725.2 Da
IEP (calculated)
10.403
GRAVY (calculated)
-0.701
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVFLEKPK SNTTLPDLSL NISLPDITSK EHYRRPSQTD NNRSSNFELS LSHHHNPSSN PTTRIIHCPD PRNLNLPHHQ HYNNPILNGG SLHQRVNESD
101: INNIHRPIRG IPVYQNRSFP FHQQTSLPSL GGGGDLDQIS ILNSSSGYNN AYRSLQSSPR LRGVPLHHHH HHNHYGVVGS TDSSSPHHHG MIRSRFLPKM
201: PTKRSMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTNKPA ASSGMCNSEQ LDLTLHTYTH RMFTFFRIAF
301: QLYIC
101: INNIHRPIRG IPVYQNRSFP FHQQTSLPSL GGGGDLDQIS ILNSSSGYNN AYRSLQSSPR LRGVPLHHHH HHNHYGVVGS TDSSSPHHHG MIRSRFLPKM
201: PTKRSMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTNKPA ASSGMCNSEQ LDLTLHTYTH RMFTFFRIAF
301: QLYIC
001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK
Arabidopsis Description
KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.