CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43006	Canola	nucleus	98.2	96.47
CDY01293	Canola	nucleus	88.62	85.55
Bra033844.1-P	Field mustard	nucleus	100.0	85.2
CDX93847	Canola	nucleus	84.13	83.14
AT1G32240.1	Thale cress	nucleus	90.12	77.58
CDX84102	Canola	nucleus	56.59	69.74
CDY71094	Canola	mitochondrion	12.87	53.75
KRH74367	Soybean	nucleus	44.31	53.62
KRH39575	Soybean	nucleus	58.38	50.0
VIT_02s0012g01940.t01	Wine grape	nucleus	53.89	48.91
CDY69225	Canola	mitochondrion	20.66	41.82
CDY68011	Canola	nucleus	26.35	41.71
CDX78794	Canola	nucleus	38.62	41.35
CDY54255	Canola	nucleus	34.13	38.13
CDY23916	Canola	nucleus	28.44	35.71
CDY28659	Canola	nucleus	32.34	35.41
CDX70701	Canola	nucleus	38.62	33.51
CDX78699	Canola	nucleus	38.32	33.16
CDY67252	Canola	nucleus	38.92	32.99
CDX69443	Canola	nucleus	38.62	32.82
PGSC0003DMT400034663	Potato	nucleus	43.41	32.22
CDX85500	Canola	nucleus	38.32	32.08
CDY38105	Canola	nucleus	38.02	31.91
Solyc11g011770.1.1	Tomato	nucleus	44.01	31.82
CDY00733	Canola	mitochondrion, nucleus	12.28	28.87
CDY16660	Canola	mitochondrion	13.77	26.59
CDX94559	Canola	mitochondrion	13.77	26.59
CDX97319	Canola	mitochondrion	14.07	22.71
CDY09392	Canola	nucleus	17.07	21.76
CDY70922	Canola	nucleus	16.77	21.62
CDY45272	Canola	nucleus	14.97	20.24
CDY17617	Canola	nucleus	15.57	20.0
CDY59419	Canola	nucleus	14.37	20.0
CDY41090	Canola	nucleus	14.67	19.84
CDX82805	Canola	nucleus	14.37	19.83
CDX81654	Canola	nucleus	14.37	19.83
CDY17443	Canola	nucleus	15.57	19.7
CDY04115	Canola	nucleus	14.07	17.34
CDX74898	Canola	nucleus	17.07	16.67
CDX91442	Canola	nucleus	17.07	16.29
CDY67147	Canola	nucleus	15.57	15.9
CDY42825	Canola	nucleus	15.27	15.6
CDY02401	Canola	nucleus	28.74	15.38
CDX74803	Canola	nucleus	16.77	14.58
CDY07612	Canola	nucleus	16.47	14.03
CDY52431	Canola	nucleus	16.17	13.88
CDY18860	Canola	nucleus	16.77	13.76
CDY07070	Canola	nucleus	16.17	12.98
CDX93206	Canola	nucleus	16.17	12.92
CDY04116	Canola	nucleus	6.59	10.84
CDY69675	Canola	cytosol, nucleus	2.69	7.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078HCP6	UniProt:A0A078HCP6	EnsemblPlants:CDY35557	ProteinID:CDY35557
ProteinID:CDY35557.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00058621001	InterPro:Homeobox-like_sf
InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0004EDE42F	SEG:seg	:	:	:

Description

BnaA05g16290DBnaA05g16290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCP6]

Coordinates

chrLK032354:-:340996..346059

Molecular Weight (calculated)

37920.3 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.886

Length

334 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTSKTTNN HHHPLGDLSL SNNSHQHQQQ HQHPLLLPNC NGSNILTSFQ FQTQQQQGFL AHDLNTHLRP IRGIPLYQNH
101: HPHHHHRPPP PYFPFDPSSV SNSGLITNPN YHNHQHHHHQ TLNRARFMPR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT
201: LAHVKSHLQM YRTVKTTDKA AASSGQSDVY ENGSSGDNNS DDWMFDINRK SRDSDELMNP LEKSNGLWTN SSGEARLHGK LIDNVAEIML PSEKEIDGKC
301: SSYERISSEE RSLSSISGTS PFKPNLEFTL GRYH

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.