Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45272 | Canola | nucleus | 96.36 | 96.36 |
| Bra026202.1-P | Field mustard | nucleus | 77.73 | 96.0 |
| AT1G14600.1 | Thale cress | nucleus | 85.43 | 82.75 |
| CDX81654 | Canola | nucleus | 78.14 | 79.75 |
| CDX82805 | Canola | nucleus | 77.73 | 79.34 |
| CDY59419 | Canola | nucleus | 76.52 | 78.75 |
| CDY70922 | Canola | nucleus | 62.35 | 59.46 |
| CDY17617 | Canola | nucleus | 61.94 | 58.85 |
| CDY09392 | Canola | nucleus | 62.35 | 58.78 |
| CDY71094 | Canola | mitochondrion | 19.03 | 58.75 |
| CDY17443 | Canola | nucleus | 56.68 | 53.03 |
| CDY69675 | Canola | cytosol, nucleus | 24.7 | 52.59 |
| CDY04115 | Canola | nucleus | 55.47 | 50.55 |
| CDY04116 | Canola | nucleus | 39.68 | 48.28 |
| KRH49492 | Soybean | nucleus | 39.27 | 32.33 |
| KRG89170 | Soybean | nucleus | 37.65 | 31.63 |
| CDY00733 | Canola | mitochondrion, nucleus | 17.81 | 30.99 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 33.2 | 27.06 |
| KRG90693 | Soybean | nucleus | 32.79 | 26.73 |
| KRH36060 | Soybean | nucleus | 26.32 | 26.64 |
| CDX94559 | Canola | mitochondrion | 18.62 | 26.59 |
| GSMUA_Achr11P... | Banana | nucleus | 25.1 | 26.5 |
| CDX97319 | Canola | mitochondrion | 21.86 | 26.09 |
| CDY16660 | Canola | mitochondrion | 18.22 | 26.01 |
| PGSC0003DMT400075668 | Potato | nucleus | 31.17 | 25.0 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 29.15 | 24.66 |
| Solyc04g008480.1.1 | Tomato | nucleus | 29.55 | 24.58 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 24.29 | 24.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.34 | 23.73 |
| CDY69225 | Canola | mitochondrion | 15.79 | 23.64 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 25.1 | 21.68 |
| CDX74898 | Canola | nucleus | 28.74 | 20.76 |
| CDX91442 | Canola | nucleus | 28.34 | 20.0 |
| CDY67147 | Canola | nucleus | 25.1 | 18.96 |
| CDY42825 | Canola | nucleus | 24.7 | 18.65 |
| CDY52431 | Canola | nucleus | 29.15 | 18.51 |
| CDY68011 | Canola | nucleus | 15.79 | 18.48 |
| CDX74803 | Canola | nucleus | 27.53 | 17.71 |
| CDY07612 | Canola | nucleus | 27.94 | 17.6 |
| CDX84102 | Canola | nucleus | 18.62 | 16.97 |
| CDY18860 | Canola | nucleus | 27.94 | 16.95 |
| CDY07070 | Canola | nucleus | 28.34 | 16.83 |
| CDX93206 | Canola | nucleus | 27.53 | 16.27 |
| CDY54255 | Canola | nucleus | 19.43 | 16.05 |
| CDX78794 | Canola | nucleus | 20.24 | 16.03 |
| CDY23916 | Canola | nucleus | 16.6 | 15.41 |
| CDY28659 | Canola | nucleus | 18.62 | 15.08 |
| CDX93847 | Canola | nucleus | 20.24 | 14.79 |
| CDY35557 | Canola | nucleus | 19.84 | 14.67 |
| CDY43006 | Canola | nucleus | 19.84 | 14.41 |
| CDY01293 | Canola | nucleus | 19.84 | 14.16 |
| CDX70701 | Canola | nucleus | 19.84 | 12.73 |
| CDX69443 | Canola | nucleus | 20.24 | 12.72 |
| CDX78699 | Canola | nucleus | 19.84 | 12.69 |
| CDY67252 | Canola | nucleus | 20.24 | 12.69 |
| CDX85500 | Canola | nucleus | 20.24 | 12.53 |
| CDY38105 | Canola | nucleus | 19.84 | 12.31 |
| CDY02401 | Canola | nucleus | 16.6 | 6.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078HRA3 | UniProt:A0A078HRA3 | EnsemblPlants:CDY41090 | ProteinID:CDY41090 |
| ProteinID:CDY41090.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00072417001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 |
| PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEC9EB | SEG:seg |
Description
BnaC05g10810DBnaC05g10810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRA3]
Coordinates
chrLK032490:-:29509..32238
Molecular Weight (calculated)
27913.6 Da
IEP (calculated)
8.856
GRAVY (calculated)
-0.793
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKCGRSSDG GISGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV QGLTISHVKS HLQMYRGSRP TLLGRQEESS SSSSRRRRRQ
101: DNGDQLHDNL SEHARNDCLF GFHSFNFRRE QNSGTDNDDD DFLNIMNMAR TKTFAGNGES IKFQPYHFLE AQSMKSNMGN EHEEEELSLS LSLNHPPNHQ
201: QRWRSNASSS LSEASEAVSS PFTSRDCFAS SKIDLNLNLS FPSLLRS
101: DNGDQLHDNL SEHARNDCLF GFHSFNFRRE QNSGTDNDDD DFLNIMNMAR TKTFAGNGES IKFQPYHFLE AQSMKSNMGN EHEEEELSLS LSLNHPPNHQ
201: QRWRSNASSS LSEASEAVSS PFTSRDCFAS SKIDLNLNLS FPSLLRS
001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
Arabidopsis Description
Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.