Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004973.1-P | Field mustard | nucleus | 99.74 | 94.1 |
| CDY18860 | Canola | nucleus | 95.83 | 90.42 |
| CDY52431 | Canola | nucleus | 77.34 | 76.35 |
| CDY07612 | Canola | nucleus | 77.08 | 75.51 |
| CDY07070 | Canola | nucleus | 81.77 | 75.48 |
| CDX93206 | Canola | nucleus | 81.25 | 74.64 |
| CDY71094 | Canola | mitochondrion | 12.5 | 60.0 |
| Os11t0106100-00 | Rice | nucleus | 19.27 | 34.74 |
| CDY00733 | Canola | mitochondrion, nucleus | 11.98 | 32.39 |
| CDX74898 | Canola | nucleus | 28.39 | 31.87 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 26.82 | 31.79 |
| TraesCS5A01G153000.1 | Wheat | nucleus | 26.82 | 31.6 |
| CDX91442 | Canola | nucleus | 28.39 | 31.14 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 26.82 | 30.56 |
| CDY16660 | Canola | mitochondrion | 13.54 | 30.06 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 25.52 | 29.52 |
| CDX94559 | Canola | mitochondrion | 13.28 | 29.48 |
| TraesCS4A01G180900.1 | Wheat | nucleus | 25.78 | 29.03 |
| CDX82805 | Canola | nucleus | 18.23 | 28.93 |
| CDX81654 | Canola | nucleus | 18.23 | 28.93 |
| CDY59419 | Canola | nucleus | 17.97 | 28.75 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 25.52 | 28.74 |
| CDY69225 | Canola | mitochondrion | 12.24 | 28.48 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 25.0 | 28.32 |
| CDY45272 | Canola | nucleus | 17.97 | 27.94 |
| CDY41090 | Canola | nucleus | 17.71 | 27.53 |
| CDY17617 | Canola | nucleus | 18.49 | 27.31 |
| CDY09392 | Canola | nucleus | 18.49 | 27.1 |
| CDY70922 | Canola | nucleus | 18.23 | 27.03 |
| EES09087 | Sorghum | nucleus | 25.52 | 27.0 |
| EES15503 | Sorghum | nucleus | 25.26 | 26.5 |
| Zm00001d005087_P001 | Maize | nucleus | 23.7 | 26.15 |
| CDY17443 | Canola | nucleus | 17.71 | 25.76 |
| Os12t0105600-01 | Rice | nucleus | 20.83 | 25.48 |
| CDX97319 | Canola | mitochondrion | 13.54 | 25.12 |
| CDY42825 | Canola | nucleus | 21.35 | 25.08 |
| CDY67147 | Canola | nucleus | 20.83 | 24.46 |
| CDY04115 | Canola | nucleus | 16.93 | 23.99 |
| CDY23916 | Canola | nucleus | 13.54 | 19.55 |
| CDX84102 | Canola | nucleus | 13.28 | 18.82 |
| CDY69675 | Canola | cytosol, nucleus | 5.47 | 18.1 |
| CDY68011 | Canola | nucleus | 9.9 | 18.01 |
| CDY54255 | Canola | nucleus | 13.28 | 17.06 |
| CDX93847 | Canola | nucleus | 14.84 | 16.86 |
| CDY35557 | Canola | nucleus | 14.58 | 16.77 |
| CDY43006 | Canola | nucleus | 14.58 | 16.47 |
| CDY04116 | Canola | nucleus | 8.59 | 16.26 |
| CDY01293 | Canola | nucleus | 14.58 | 16.18 |
| CDY28659 | Canola | nucleus | 12.5 | 15.74 |
| CDX78794 | Canola | nucleus | 12.76 | 15.71 |
| CDX70701 | Canola | nucleus | 14.84 | 14.81 |
| CDX69443 | Canola | nucleus | 14.84 | 14.5 |
| CDX78699 | Canola | nucleus | 14.32 | 14.25 |
| CDY67252 | Canola | nucleus | 14.58 | 14.21 |
| CDY38105 | Canola | nucleus | 14.32 | 13.82 |
| CDX85500 | Canola | nucleus | 14.32 | 13.78 |
| CDY02401 | Canola | nucleus | 14.32 | 8.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078CIE2 | EnsemblPlants:CDX74803 | ProteinID:CDX74803 | ProteinID:CDX74803.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00116777001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 |
| PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEF490 | SEG:seg |
Description
BnaA05g05490D
Coordinates
chrLK031802:+:673913..675751
Molecular Weight (calculated)
43289.3 Da
IEP (calculated)
9.594
GRAVY (calculated)
-1.014
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSSQSSEN SKTCPSNNFK ETTKKEDNKD DENKDEEARS VDQIPSNNSY VEESGSHHHN NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKFG
101: GPDRATPKLV LQLMNVKGLC IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYDGG SWTDRRRQVY RSPWRGLTAR
201: NSTRTRPTLF SSQSGERFRG VSNSILDDKN KAISFRINSH EAAQASNGVG ESVPSIHRSF LEGPQDHIAT TLSSNQRENP RVAEETENVL KRKRLLLSDD
301: CNKSVQDLDL SLSLKVHRTH NNLGDCLLED EEKKLDDHED IKGLSLSLAS SSSSKLGRDI RKEVQNDTKK RKISVLASPL DLTL
101: GPDRATPKLV LQLMNVKGLC IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYDGG SWTDRRRQVY RSPWRGLTAR
201: NSTRTRPTLF SSQSGERFRG VSNSILDDKN KAISFRINSH EAAQASNGVG ESVPSIHRSF LEGPQDHIAT TLSSNQRENP RVAEETENVL KRKRLLLSDD
301: CNKSVQDLDL SLSLKVHRTH NNLGDCLLED EEKKLDDHED IKGLSLSLAS SSSSKLGRDI RKEVQNDTKK RKISVLASPL DLTL
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.