Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024836.1-P | Field mustard | nucleus | 99.62 | 100.0 |
| CDY69675 | Canola | cytosol, nucleus | 41.15 | 92.24 |
| CDY70922 | Canola | nucleus | 81.54 | 81.85 |
| CDY09392 | Canola | nucleus | 81.54 | 80.92 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 73.85 | 75.0 |
| CDY17443 | Canola | nucleus | 74.62 | 73.48 |
| CDY04115 | Canola | nucleus | 73.85 | 70.85 |
| CDY04116 | Canola | nucleus | 53.85 | 68.97 |
| CDX81654 | Canola | nucleus | 58.08 | 62.4 |
| CDY45272 | Canola | nucleus | 59.23 | 62.35 |
| CDY59419 | Canola | nucleus | 57.31 | 62.08 |
| CDX82805 | Canola | nucleus | 57.69 | 61.98 |
| CDY41090 | Canola | nucleus | 58.85 | 61.94 |
| CDY71094 | Canola | mitochondrion | 18.85 | 61.25 |
| KRG89170 | Soybean | nucleus | 37.69 | 33.33 |
| KRH49492 | Soybean | nucleus | 38.08 | 33.0 |
| CDY00733 | Canola | mitochondrion, nucleus | 16.92 | 30.99 |
| CDX94559 | Canola | mitochondrion | 18.85 | 28.32 |
| KRH36060 | Soybean | nucleus | 26.15 | 27.87 |
| CDY16660 | Canola | mitochondrion | 18.46 | 27.75 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 32.31 | 27.72 |
| CDX97319 | Canola | mitochondrion | 21.54 | 27.05 |
| KRG90693 | Soybean | nucleus | 31.15 | 26.73 |
| GSMUA_Achr11P... | Banana | nucleus | 23.08 | 25.64 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 26.92 | 23.97 |
| CDY69225 | Canola | mitochondrion | 15.0 | 23.64 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 22.31 | 23.39 |
| PGSC0003DMT400075668 | Potato | nucleus | 27.69 | 23.38 |
| Solyc04g008480.1.1 | Tomato | nucleus | 26.54 | 23.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.38 | 22.37 |
| CDX74898 | Canola | nucleus | 27.69 | 21.05 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 23.08 | 20.98 |
| CDX91442 | Canola | nucleus | 27.31 | 20.29 |
| CDY42825 | Canola | nucleus | 25.0 | 19.88 |
| CDY67147 | Canola | nucleus | 24.62 | 19.57 |
| CDY52431 | Canola | nucleus | 28.46 | 19.02 |
| CDX74803 | Canola | nucleus | 27.31 | 18.49 |
| CDY07612 | Canola | nucleus | 27.31 | 18.11 |
| CDY18860 | Canola | nucleus | 27.69 | 17.69 |
| CDY07070 | Canola | nucleus | 27.69 | 17.31 |
| CDX93206 | Canola | nucleus | 26.92 | 16.75 |
| CDY54255 | Canola | nucleus | 19.23 | 16.72 |
| CDX84102 | Canola | nucleus | 17.31 | 16.61 |
| CDY68011 | Canola | nucleus | 13.08 | 16.11 |
| CDX78794 | Canola | nucleus | 19.23 | 16.03 |
| CDY35557 | Canola | nucleus | 20.0 | 15.57 |
| CDY23916 | Canola | nucleus | 15.77 | 15.41 |
| CDX93847 | Canola | nucleus | 19.62 | 15.09 |
| CDY43006 | Canola | nucleus | 19.62 | 15.0 |
| CDY01293 | Canola | nucleus | 19.23 | 14.45 |
| CDY28659 | Canola | nucleus | 16.92 | 14.43 |
| CDX69443 | Canola | nucleus | 18.46 | 12.21 |
| CDX70701 | Canola | nucleus | 18.08 | 12.21 |
| CDY67252 | Canola | nucleus | 18.46 | 12.18 |
| CDX78699 | Canola | nucleus | 18.08 | 12.18 |
| CDY38105 | Canola | nucleus | 18.08 | 11.81 |
| CDX85500 | Canola | nucleus | 18.08 | 11.78 |
| CDY02401 | Canola | nucleus | 15.77 | 6.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078FXY6 | UniProt:A0A078FXY6 | EnsemblPlants:CDY17617 | ProteinID:CDY17617 |
| ProteinID:CDY17617.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00001826001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE73F7 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g34360DBnaA06g34360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXY6]
Coordinates
chrLK032076:-:135970..138594
Molecular Weight (calculated)
28972.9 Da
IEP (calculated)
7.925
GRAVY (calculated)
-0.752
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTCGGRNGN DVGFNGHGGG RVRPYVRSPV PRLRWTPELH RCFLNAVDML GGQHRATPKL ILKMMDVRGL TISHVKSHLQ MYRGSKLTLG KSEESSLSSI
101: RRRQDTEEDY LHDNLSLPSR NDCLLGFHSF PLSSHSSLRG GRRENQTSQS GGGDDDDDFL HIINMEKTKE TTAFPSHQCH KKTEKEKNKW ENSGKEQEEE
201: DLSLSLSLNH HQWRSNGSSV SETSEAVSTC SAPFVFKDCF ASSSPKIDLN LTLSVSLLSS
101: RRRQDTEEDY LHDNLSLPSR NDCLLGFHSF PLSSHSSLRG GRRENQTSQS GGGDDDDDFL HIINMEKTKE TTAFPSHQCH KKTEKEKNKW ENSGKEQEEE
201: DLSLSLSLNH HQWRSNGSSV SETSEAVSTC SAPFVFKDCF ASSSPKIDLN LTLSVSLLSS
001: MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
Arabidopsis Description
Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q7X887]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.