Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70922 | Canola | nucleus | 80.47 | 79.54 |
| CDY09392 | Canola | nucleus | 80.47 | 78.63 |
| Bra026618.1-P | Field mustard | nucleus | 80.47 | 78.63 |
| Bra024836.1-P | Field mustard | nucleus | 75.0 | 74.13 |
| CDY17617 | Canola | nucleus | 75.0 | 73.85 |
| Bra017425.1-P | Field mustard | nucleus | 56.25 | 72.73 |
| CDY17443 | Canola | nucleus | 73.44 | 71.21 |
| CDY04115 | Canola | nucleus | 72.27 | 68.27 |
| CDY04116 | Canola | nucleus | 53.52 | 67.49 |
| AT1G14600.1 | Thale cress | nucleus | 62.89 | 63.14 |
| AT4G04555.1 | Thale cress | mitochondrion | 17.97 | 43.4 |
| KRG89170 | Soybean | nucleus | 39.06 | 34.01 |
| KRH49492 | Soybean | nucleus | 39.45 | 33.67 |
| AT4G04605.1 | Thale cress | mitochondrion | 24.61 | 28.64 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 32.81 | 27.72 |
| KRH36060 | Soybean | nucleus | 26.17 | 27.46 |
| KRG90693 | Soybean | nucleus | 31.64 | 26.73 |
| GSMUA_Achr11P... | Banana | nucleus | 24.22 | 26.5 |
| PGSC0003DMT400075668 | Potato | nucleus | 31.25 | 25.97 |
| AT4G04580.1 | Thale cress | nucleus | 16.8 | 25.9 |
| Solyc04g008480.1.1 | Tomato | nucleus | 29.69 | 25.59 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 28.12 | 24.66 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 23.83 | 24.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.73 | 24.07 |
| AT2G42660.1 | Thale cress | nucleus | 23.44 | 23.53 |
| AT2G38300.1 | Thale cress | nucleus | 28.91 | 21.76 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 23.44 | 20.98 |
| AT2G40260.1 | Thale cress | nucleus | 29.69 | 18.54 |
| AT5G42630.1 | Thale cress | nucleus | 17.97 | 16.67 |
| AT4G17695.1 | Thale cress | nucleus | 20.31 | 16.15 |
| AT1G32240.1 | Thale cress | nucleus | 21.88 | 14.43 |
| AT5G16560.1 | Thale cress | nucleus | 20.7 | 13.15 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:814737 | ProteinID:AEC05540.1 | EMBL:AK229511 | ProteinID:ANM62772.1 |
| ArrayExpress:AT2G02060 | EnsemblPlantsGene:AT2G02060 | RefSeq:AT2G02060 | TAIR:AT2G02060 | RefSeq:AT2G02060-TAIR-G | EnsemblPlants:AT2G02060.1 |
| TAIR:AT2G02060.1 | EMBL:BT008556 | EMBL:BT008699 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EMBL:KJ138924 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_001324905.1 | RefSeq:NP_565281.2 | PFAM:PF00249 |
| PO:PO:0000084 | PO:PO:0000293 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | UniProt:Q7X887 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000019AB01 | SEG:seg | : |
Description
Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q7X887]
Coordinates
chr2:+:495381..497860
Molecular Weight (calculated)
28614.2 Da
IEP (calculated)
7.138
GRAVY (calculated)
-0.747
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.