Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000180.1-P | Field mustard | nucleus | 75.12 | 79.18 |
| CDY07612 | Canola | nucleus | 75.12 | 78.57 |
| CDY52431 | Canola | nucleus | 73.9 | 77.89 |
| AT4G04555.1 | Thale cress | mitochondrion | 11.22 | 43.4 |
| Os11t0106100-00 | Rice | nucleus | 19.02 | 36.62 |
| AT2G38300.1 | Thale cress | nucleus | 27.07 | 32.65 |
| TraesCS5A01G153000.1 | Wheat | nucleus | 25.61 | 32.21 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 25.37 | 32.1 |
| AT4G04580.1 | Thale cress | nucleus | 12.68 | 31.33 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 25.37 | 30.86 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 24.88 | 30.72 |
| TraesCS4A01G180900.1 | Wheat | nucleus | 25.12 | 30.21 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 25.12 | 30.21 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 18.54 | 29.69 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 24.15 | 29.2 |
| AT2G42660.1 | Thale cress | nucleus | 17.56 | 28.24 |
| EES09087 | Sorghum | nucleus | 24.15 | 27.27 |
| AT1G14600.1 | Thale cress | nucleus | 16.83 | 27.06 |
| EES15503 | Sorghum | nucleus | 23.9 | 26.78 |
| Os12t0105600-01 | Rice | nucleus | 20.49 | 26.75 |
| Zm00001d005087_P001 | Maize | nucleus | 22.44 | 26.44 |
| AT4G04605.1 | Thale cress | mitochondrion | 13.66 | 25.45 |
| AT5G42630.1 | Thale cress | nucleus | 14.39 | 21.38 |
| AT4G17695.1 | Thale cress | nucleus | 13.41 | 17.08 |
| AT1G32240.1 | Thale cress | nucleus | 13.66 | 14.43 |
| AT5G16560.1 | Thale cress | nucleus | 13.41 | 13.65 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:818618 | ProteinID:AAD25661.1 | ProteinID:AEC09803.1 | ProteinID:ANM62192.1 |
| ArrayExpress:AT2G40260 | EnsemblPlantsGene:AT2G40260 | RefSeq:AT2G40260 | TAIR:AT2G40260 | RefSeq:AT2G40260-TAIR-G | EnsemblPlants:AT2G40260.1 |
| TAIR:AT2G40260.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_001324369.1 | RefSeq:NP_181555.1 | PFAM:PF00249 |
| PO:PO:0000013 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | UniProt:Q9SIZ5 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000AA8AE | SEG:seg | : | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
Coordinates
chr2:-:16816530..16818730
Molecular Weight (calculated)
46234.2 Da
IEP (calculated)
6.765
GRAVY (calculated)
-1.069
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.