Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G131500.1 | Wheat | nucleus | 93.55 | 93.55 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 92.38 | 92.92 |
| TraesCS5A01G153000.1 | Wheat | nucleus | 56.6 | 59.2 |
| VIT_08s0058g00250.t01 | Wine grape | nucleus | 16.13 | 47.41 |
| EES15503 | Sorghum | nucleus | 48.97 | 45.63 |
| EES09087 | Sorghum | nucleus | 48.09 | 45.18 |
| Solyc09g005030.1.1 | Tomato | nucleus | 18.48 | 43.15 |
| Os11t0106100-00 | Rice | nucleus | 26.39 | 42.25 |
| Zm00001d005087_P001 | Maize | nucleus | 42.23 | 41.38 |
| VIT_06s0004g07000.t01 | Wine grape | nucleus | 19.94 | 38.42 |
| Solyc10g076460.1.1 | Tomato | nucleus | 27.27 | 30.79 |
| Os12t0105600-01 | Rice | nucleus | 28.15 | 30.57 |
| PGSC0003DMT400041071 | Potato | nucleus | 26.39 | 29.8 |
| Solyc06g051060.2.1 | Tomato | nucleus | 21.41 | 28.74 |
| PGSC0003DMT400068508 | Potato | nucleus | 26.69 | 27.83 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 26.69 | 27.41 |
| Bra000180.1-P | Field mustard | nucleus | 30.79 | 26.99 |
| CDY07612 | Canola | nucleus | 30.79 | 26.79 |
| CDY52431 | Canola | nucleus | 30.5 | 26.74 |
| KRH75999 | Soybean | nucleus | 26.1 | 25.95 |
| CDX74803 | Canola | nucleus | 29.03 | 25.78 |
| CDY07070 | Canola | nucleus | 31.38 | 25.72 |
| KRH65638 | Soybean | nucleus | 25.81 | 25.43 |
| KRH49433 | Soybean | nucleus | 27.27 | 25.41 |
| KRH00305 | Soybean | nucleus | 27.27 | 25.2 |
| AT2G40260.1 | Thale cress | nucleus | 30.21 | 25.12 |
| Bra004973.1-P | Field mustard | nucleus | 29.91 | 25.06 |
| CDX93206 | Canola | nucleus | 30.5 | 24.88 |
| TraesCS7A01G470200.1 | Wheat | nucleus | 17.89 | 24.8 |
| PGSC0003DMT400077217 | Potato | nucleus | 27.57 | 24.67 |
| CDY18860 | Canola | nucleus | 29.33 | 24.57 |
| TraesCS7A01G469900.1 | Wheat | nucleus | 17.6 | 24.1 |
| TraesCS7A01G470100.1 | Wheat | nucleus | 17.6 | 23.81 |
| VIT_13s0067g01500.t01 | Wine grape | extracellular, vacuole | 28.45 | 20.68 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 28.45 | 20.34 |
| TraesCS2A01G402700.1 | Wheat | nucleus | 17.6 | 20.27 |
| TraesCS6A01G254700.1 | Wheat | nucleus | 17.01 | 19.14 |
| TraesCS1A01G202500.1 | Wheat | nucleus | 18.77 | 18.13 |
| TraesCS6A01G007300.1 | Wheat | nucleus | 15.84 | 16.27 |
| Bra017021.1-P | Field mustard | nucleus | 16.72 | 15.66 |
| TraesCS5A01G064700.1 | Wheat | nucleus | 15.84 | 15.47 |
| TraesCS6A01G266400.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 15.84 | 15.21 |
| TraesCS4A01G242600.1 | Wheat | nucleus | 16.42 | 15.09 |
| TraesCS7A01G298700.1 | Wheat | nucleus | 15.25 | 15.07 |
| TraesCS7A01G345200.2 | Wheat | nucleus | 22.58 | 14.89 |
| TraesCS5A01G496100.1 | Wheat | nucleus | 16.42 | 14.81 |
| TraesCS5A01G402800.1 | Wheat | mitochondrion, plastid | 14.37 | 12.96 |
| TraesCS5A01G203200.1 | Wheat | nucleus | 16.42 | 12.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS4A01G180900 |
| EnsemblPlants:TraesCS4A01G180900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:455272258..455273769
Molecular Weight (calculated)
37760.1 Da
IEP (calculated)
7.565
GRAVY (calculated)
-0.709
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSNMGNEG SSAASNDDST VEEEGGQDMT RAGDSSSSVR PYVRSKNPRL RWTPELHHCF VRAVERLGGQ DLATPKLVLQ LMNVRGLSIG HVKSHLQMYR
101: SKKIDDSGQV IIGHLQQGGQ VYNYAHLPFH HRVSGAGTML SRFGTRPCPP SRGSWHEPYW LHGHRLLGSK PYYSSSAAAH HDEALLRARA QHVSGYNPAL
201: IVQESSSSRN DYHAMNRYHY ERRPLQAATT EDNDDQIHGR DINLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDDQVD VNEELKSTAT RLSLSLLSPS
301: PITLDRKGSS ASDHALGLDV NVDKIGKVQY AIRASTLDLT I
101: SKKIDDSGQV IIGHLQQGGQ VYNYAHLPFH HRVSGAGTML SRFGTRPCPP SRGSWHEPYW LHGHRLLGSK PYYSSSAAAH HDEALLRARA QHVSGYNPAL
201: IVQESSSSRN DYHAMNRYHY ERRPLQAATT EDNDDQIHGR DINLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDDQVD VNEELKSTAT RLSLSLLSPS
301: PITLDRKGSS ASDHALGLDV NVDKIGKVQY AIRASTLDLT I
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.