CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRH04275
KRH11729
KRH11775
KRH16959
KRH28216
KRH28419
KRH36722
KRH36781
KRH43001
KRH50476
KRH53667
KRH57556
KRH57983
KRH59117
KRH64261
KRH77058
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	KRH28419	AT2G23290.1	21798944
AT2G38300.1	KRH57983	AT2G23290.1	21798944
AT2G38300.1	KRH77058	AT2G23290.1	21798944
AT2G38300.1	KRH11775	AT2G34710.1	21798944
AT2G38300.1	KRH36781	AT2G34710.1	21798944
AT2G38300.1	KRH43001	AT2G34710.1	21798944
AT2G38300.1	KRH59117	AT2G34710.1	21798944
AT2G38300.1	KRH04275	AT4G17680.1	21798944
AT2G38300.1	KRH28216	AT4G17680.1	21798944
AT2G38300.1	KRH57556	AT4G17680.1	21798944
AT2G38300.1	KRH77271	AT4G17680.1	21798944
AT2G38300.1	KRG89416	AT4G19700.1	21798944
AT2G38300.1	KRH11729	AT4G19700.1	21798944
AT2G38300.1	KRH36722	AT4G19700.1	21798944
AT2G38300.1	KRH50476	AT4G19700.1	21798944
AT2G38300.1	KRH16959	AT5G24660.1	21798944
AT2G38300.1	KRH53667	AT5G24660.1	21798944
AT2G38300.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65638	Soybean	nucleus	90.38	89.6
VIT_08s0058g00250.t01	Wine grape	nucleus	24.2	71.55
Solyc09g005030.1.1	Tomato	nucleus	25.36	59.59
KRH49433	Soybean	nucleus	62.97	59.02
KRH00305	Soybean	nucleus	62.97	58.54
PGSC0003DMT400068508	Potato	nucleus	39.94	41.9
PGSC0003DMT400041071	Potato	nucleus	33.53	38.08
Solyc10g076460.1.1	Tomato	nucleus	33.24	37.75
Os11t0106100-00	Rice	nucleus	20.99	33.8
GSMUA_Achr7P22410_001	Banana	nucleus	32.36	33.43
Bra005124.1-P	Field mustard	nucleus	32.65	33.23
CDX74898	Canola	nucleus	32.65	32.75
AT2G38300.1	Thale cress	nucleus	32.36	32.65
CDX91442	Canola	nucleus	32.36	31.71
TraesCS5D01G158300.1	Wheat	nucleus	27.99	29.63
TraesCS5A01G153000.1	Wheat	nucleus	27.7	29.14
Os12t0105600-01	Rice	nucleus	26.24	28.66
TraesCS5B01G151800.1	Wheat	nucleus	27.99	28.49
KRH27060	Soybean	nucleus	29.45	27.45
KRH22274	Soybean	nucleus	29.45	27.37
EES15503	Sorghum	nucleus	28.28	26.5
TraesCS4A01G180900.1	Wheat	nucleus	25.95	26.1
TraesCS4D01G131500.1	Wheat	nucleus	25.66	25.81
KRH14524	Soybean	nucleus	13.99	25.67
EES09087	Sorghum	nucleus	27.11	25.62
TraesCS4B01G136900.1	Wheat	nucleus	24.78	25.07
KRG99004	Soybean	nucleus	15.16	25.0
KRH15279	Soybean	mitochondrion	13.99	24.87
KRH11029	Soybean	nucleus	25.66	24.11
KRH73595	Soybean	nucleus	14.87	23.94
Zm00001d005087_P001	Maize	nucleus	24.2	23.85
KRH42874	Soybean	nucleus	27.7	23.63
KRH21258	Soybean	nucleus	25.66	23.59
KRH58975	Soybean	nucleus	27.41	23.44
KRH11454	Soybean	nucleus	19.53	23.34
KRH36473	Soybean	nucleus	19.24	23.32
KRG90693	Soybean	nucleus	19.83	22.44
KRG89170	Soybean	nucleus	18.66	21.77
KRH49492	Soybean	nucleus	18.08	20.67
KRH74367	Soybean	nucleus	14.58	18.12
KRH05752	Soybean	nucleus	16.62	17.22
KRH61226	Soybean	nucleus	16.33	16.92
KRH51927	Soybean	nucleus	16.04	16.67
KRH39575	Soybean	nucleus	17.49	15.38
KRH36060	Soybean	nucleus	10.79	15.16
KRH39002	Soybean	nucleus	17.2	14.32
KRH48713	Soybean	nucleus	16.91	13.94
KRH17301	Soybean	nucleus	16.33	12.07
KRH72942	Soybean	nucleus	15.74	11.59
KRG97985	Soybean	nucleus	15.45	11.13
KRH30907	Soybean	nucleus	15.74	10.69
KRH45989	Soybean	nucleus	3.79	8.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102660246	MapMan:15.5.2.3	EMBL:ACUP02000545	EnsemblPlantsGene:GLYMA_01G123600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7K3F7	EnsemblPlants:KRH75999
ProteinID:KRH75999	ProteinID:KRH75999.1	ProteinID:KRH76000.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF2	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00023BDDFF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:42734205..42736370

Molecular Weight (calculated)

38592.1 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.813

Length

343 amino acids

Sequence
(BLAST)

001: MEERHGSQCS KTNPSNIDED EECESEANEE QSTQKNNGGS SSNSTVEENE KKIRPYVRSK MPRLRWTPDL HLRFVHAVQR LGGQERATPK LVLQLMNVKG
101: LSIAHVKSHL QMFRSKKVDD RNQVFADYNN LVEIGDKNIY NISQLSMLQG YNPSQSSSFS YTNNYPCYGL GDASFGVYEK LLQRPFDWSN AISREGSSIF
201: GEQSKIREPK DEFLSFGAHD SLSARARLSH VDHIPPINIL QQRAQKNTMP INPTTNPPEL KTLKRKASDT TLDLDLSLKL NSKIDDAEEG TLKNHEVDST
301: NLSLSLCSQS SSSNNPISRL IKEAQQDRCD EQGKMASTLD LAI

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.