Factsheet for PGSC0003DMT400041071

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400004642
PGSC0003DMT400026783
PGSC0003DMT400030829
PGSC0003DMT400052841
PGSC0003DMT400054421
PGSC0003DMT400062617
PGSC0003DMT400064306
PGSC0003DMT400068387
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT2G38300.1	PGSC0003DMT400030829	AT2G34710.1	21798944
AT2G38300.1	PGSC0003DMT400054421	AT2G34710.1	21798944
AT2G38300.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT2G38300.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT2G38300.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT2G38300.1	PGSC0003DMT400026783	AT4G19700.1	21798944
AT2G38300.1	PGSC0003DMT400062617	AT4G19700.1	21798944
AT2G38300.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT2G38300.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT2G38300.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT2G38300.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076460.1.1	Tomato	nucleus	94.7	94.7
VIT_08s0058g00250.t01	Wine grape	nucleus	22.19	57.76
PGSC0003DMT400068508	Potato	nucleus	42.38	39.14
Os11t0106100-00	Rice	nucleus	24.83	35.21
KRH75999	Soybean	nucleus	38.08	33.53
AT2G38300.1	Thale cress	nucleus	37.42	33.24
KRH65638	Soybean	nucleus	37.75	32.95
Bra005124.1-P	Field mustard	nucleus	35.76	32.05
KRH00305	Soybean	nucleus	38.74	31.71
KRH49433	Soybean	nucleus	38.41	31.69
CDX74898	Canola	nucleus	35.76	31.58
CDX91442	Canola	nucleus	36.09	31.14
GSMUA_Achr7P22410_001	Banana	nucleus	34.11	31.02
PGSC0003DMT400077217	Potato	nucleus	39.07	30.97
PGSC0003DMT400074183	Potato	mitochondrion	14.57	27.85
TraesCS5D01G158300.1	Wheat	nucleus	28.48	26.54
TraesCS4A01G180900.1	Wheat	nucleus	29.8	26.39
TraesCS5A01G153000.1	Wheat	nucleus	28.48	26.38
TraesCS5B01G151800.1	Wheat	nucleus	28.81	25.82
PGSC0003DMT400011207	Potato	nucleus	19.87	25.32
TraesCS4D01G131500.1	Wheat	nucleus	28.15	24.93
EES15503	Sorghum	nucleus	30.13	24.86
TraesCS4B01G136900.1	Wheat	nucleus	27.81	24.78
EES09087	Sorghum	nucleus	29.47	24.52
Os12t0105600-01	Rice	nucleus	25.17	24.2
Zm00001d005087_P001	Maize	nucleus	27.15	23.56
PGSC0003DMT400026419	Potato	nucleus	25.5	22.13
PGSC0003DMT400042480	Potato	nucleus	14.57	21.46
PGSC0003DMT400002410	Potato	nucleus	14.57	20.37
PGSC0003DMT400042402	Potato	nucleus	11.26	19.43
PGSC0003DMT400075668	Potato	nucleus	19.54	19.16
PGSC0003DMT400038366	Potato	nucleus	16.23	18.99
PGSC0003DMT400030518	Potato	nucleus	17.88	17.53
PGSC0003DMT400047532	Potato	nucleus	17.88	14.96
PGSC0003DMT400043200	Potato	nucleus	18.21	13.82
PGSC0003DMT400017981	Potato	nucleus	17.22	13.79
PGSC0003DMT400034663	Potato	nucleus	18.87	12.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1BAV7	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400015893
PGSC:PGSC0003DMG400015893	EnsemblPlants:PGSC0003DMT400041071	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294928F	SEG:seg	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015893]

Coordinates

chr10:+:49699620..49701642

Molecular Weight (calculated)

34309.4 Da

IEP (calculated)

7.756

GRAVY (calculated)

-0.790

Length

302 amino acids

Sequence
(BLAST)

001: MEDSGGTEFS KTSPNSDQNE EEDENVTSTK LHKDGGSSST STIEESEKKF SVRPYVRSKM VRLRWTPDLH RRFVHVVERL GGHDRATPKL VLQLMNIKGL
101: NIAHVKSHLQ MYRSKKIDDP AQGITNHHKL CMEGGDPYIY YNLSQLPMLS SFKQRFNSTF RYGDVSSRNC QDHDLMHSSI MRQSTIDKAR IGLYTTLNER
201: IFGNNPIDKL TPLFQIAEKS QARILNTPLK RKAEDCDLID LNLSLGVKQK HNSHDDDNDD DDGSTLTLSL SSQRSPSRLK EDVNYAIIEN ARRGASTLDL
301: TL

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.