Factsheet for PGSC0003DMT400038366

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076400.2.1	Tomato	nucleus	92.64	90.87
GSMUA_Achr2P06700_001	Banana	cytosol, nucleus, plastid	31.78	48.52
PGSC0003DMT400047532	Potato	nucleus	59.69	42.66
PGSC0003DMT400043200	Potato	nucleus	63.95	41.46
GSMUA_Achr1P22100_001	Banana	nucleus	32.95	38.81
TraesCS7D01G294400.1	Wheat	nucleus	39.92	29.68
TraesCS7B01G200700.1	Wheat	nucleus, plastid	39.92	29.68
TraesCS7A01G298700.1	Wheat	nucleus	39.53	29.57
Zm00001d024532_P001	Maize	nucleus	39.92	28.93
Zm00001d049511_P001	Maize	nucleus	38.76	28.82
PGSC0003DMT400017981	Potato	nucleus	41.47	28.38
Os08t0160300-00	Rice	nucleus	37.6	28.12
EES13398	Sorghum	nucleus	40.31	27.66
PGSC0003DMT400030518	Potato	nucleus	32.56	27.27
HORVU7Hr1G070420.2	Barley	nucleus	16.67	25.75
PGSC0003DMT400034663	Potato	nucleus	44.57	25.56
PGSC0003DMT400074183	Potato	mitochondrion	13.18	21.52
PGSC0003DMT400011207	Potato	nucleus	18.6	20.25
PGSC0003DMT400041071	Potato	nucleus	18.99	16.23
PGSC0003DMT400002410	Potato	nucleus	13.57	16.2
PGSC0003DMT400075668	Potato	nucleus	18.6	15.58
PGSC0003DMT400026419	Potato	nucleus	19.38	14.37
PGSC0003DMT400068508	Potato	nucleus	17.83	14.07
PGSC0003DMT400077217	Potato	nucleus	19.77	13.39
PGSC0003DMT400042480	Potato	nucleus	10.47	13.17
PGSC0003DMT400042402	Potato	nucleus	6.59	9.71

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102585505	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	UniProt:M1B6R0	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400014803	PGSC:PGSC0003DMG400014803
EnsemblPlants:PGSC0003DMT400038366	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0002950E25	RefSeq:XP_006352907.1	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014803]

Coordinates

chr8:-:49052486..49056435

Molecular Weight (calculated)

29095.3 Da

IEP (calculated)

9.918

GRAVY (calculated)

-0.587

Length

258 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLKISPPNIK PSSSTWKRKI TSEDDVHMDL GFWKRAHVVE STNSSNTSSC FDLSLSNNPT KPNYLHNLKN YNTSQQNQMI IRGIPVYHQK
101: PFASTTTTTT TFPIPSSPCS IISNNNINNT ISSCASTRPN FQQGGFFRSR FLSRYPVKRS TRAPRMRWTS TLHARFVHAV ELLGGHERAT PKSVLELMDV
201: KDLTLAHVKS HLQMYRTVKT TDRSASSGQS EVFDNLSSGD TSEELMVDEY FDSKSKLI

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.