Factsheet for PGSC0003DMT400074183

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006280.1.1	Tomato	nucleus	94.3	85.63
VIT_12s0028g00980.t01	Wine grape	nucleus	27.22	59.72
GSMUA_Achr9P30700_001	Banana	mitochondrion	29.11	42.2
PGSC0003DMT400002410	Potato	nucleus	56.96	41.67
GSMUA_Achr5P00310_001	Banana	nucleus	23.42	41.11
KRH14524	Soybean	nucleus	41.14	34.76
KRH73595	Soybean	nucleus	43.04	31.92
HORVU7Hr1G107500.1	Barley	mitochondrion	12.03	25.33
GSMUA_Achr7P03510_001	Banana	nucleus	31.01	23.79
Zm00001d046981_P001	Maize	nucleus	31.01	23.22
TraesCS7A01G469900.1	Wheat	nucleus	32.91	20.88
TraesCS7B01G372000.1	Wheat	nucleus	32.91	20.8
TraesCS7A01G470100.1	Wheat	nucleus	32.91	20.63
HORVU7Hr1G107670.1	Barley	nucleus	32.28	20.56
TraesCS7D01G457300.1	Wheat	nucleus	32.28	20.4
Os06t0670300-01	Rice	nucleus	32.91	20.31
OQU76857	Sorghum	nucleus	32.91	20.31
TraesCS7D01G457600.1	Wheat	nucleus	31.65	20.24
TraesCS7B01G372200.1	Wheat	nucleus	31.01	20.0
TraesCS7D01G457400.1	Wheat	nucleus	31.65	19.92
TraesCS7A01G470200.1	Wheat	nucleus	31.01	19.92
TraesCS7B01G372100.1	Wheat	nucleus	29.11	19.17
HORVU7Hr1G107680.8	Barley	nucleus	31.65	19.16
TraesCS7D01G457500.1	Wheat	nucleus	29.11	18.7
Zm00001d036638_P001	Maize	nucleus	29.11	17.29
PGSC0003DMT400075668	Potato	nucleus	32.91	16.88
PGSC0003DMT400011207	Potato	nucleus	25.32	16.88
HORVU7Hr1G107630.5	Barley	mitochondrion	27.22	15.87
PGSC0003DMT400041071	Potato	nucleus	27.85	14.57
PGSC0003DMT400042480	Potato	nucleus	18.35	14.15
PGSC0003DMT400068508	Potato	nucleus	28.48	13.76
PGSC0003DMT400038366	Potato	nucleus	21.52	13.18
PGSC0003DMT400026419	Potato	nucleus	27.85	12.64
PGSC0003DMT400077217	Potato	nucleus	30.38	12.6
TraesCSU01G097800.1	Wheat	plastid	15.19	12.31
PGSC0003DMT400030518	Potato	nucleus	23.42	12.01
PGSC0003DMT400042402	Potato	nucleus	13.29	12.0
PGSC0003DMT400047532	Potato	nucleus	25.32	11.08
PGSC0003DMT400043200	Potato	nucleus	24.05	9.55
PGSC0003DMT400017981	Potato	nucleus	21.52	9.02
PGSC0003DMT400034663	Potato	nucleus	21.52	7.56
CDY69675	Canola	cytosol, nucleus	3.8	5.17
Zm00001d020382_P001	Maize	nucleus, plastid	2.53	3.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
UniProt:M1CTB4	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400028830	PGSC:PGSC0003DMG400028830	EnsemblPlants:PGSC0003DMT400074183
PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029659E2

Description

Myb-like DNA-binding domain, SHAQKYF class family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028830]

Coordinates

chr12:-:6034635..6038440

Molecular Weight (calculated)

18237.8 Da

IEP (calculated)

9.866

GRAVY (calculated)

-0.842

Length

158 amino acids

Sequence
(BLAST)

001: MKEVRKYKKS LVPRLRWTPQ LHHLFIQSVQ NLGGRNKATP KRIVQMMAIK GLKISHVKSH LQMYRNMREH PSLHVVMPDF NLSSPMHVSK ILGEHAQNSS
101: KQKESGSKNG ENIHYNYYQE AEGSISSGMT KEEEEDNAGE IYEYRETSTQ INLDLTLS

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.