Factsheet for PGSC0003DMT400047532

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005260.1.1	Tomato	nucleus	95.29	95.29
PGSC0003DMT400038366	Potato	nucleus	42.66	59.69
PGSC0003DMT400043200	Potato	nucleus	62.33	56.53
PGSC0003DMT400017981	Potato	nucleus	35.73	34.22
GSMUA_Achr4P04510_001	Banana	nucleus	34.63	33.33
PGSC0003DMT400034663	Potato	nucleus	40.17	32.22
VIT_04s0043g00340.t01	Wine grape	nucleus	40.17	31.05
PGSC0003DMT400030518	Potato	nucleus	26.32	30.84
PGSC0003DMT400074183	Potato	mitochondrion	11.08	25.32
PGSC0003DMT400011207	Potato	nucleus	14.13	21.52
PGSC0003DMT400002410	Potato	nucleus	11.36	18.98
PGSC0003DMT400042480	Potato	nucleus	10.53	18.54
PGSC0003DMT400041071	Potato	nucleus	14.96	17.88
PGSC0003DMT400075668	Potato	nucleus	15.24	17.86
PGSC0003DMT400026419	Potato	nucleus	16.34	16.95
PGSC0003DMT400077217	Potato	nucleus	16.9	16.01
PGSC0003DMT400042402	Potato	nucleus	7.48	15.43
PGSC0003DMT400068508	Potato	nucleus	13.57	14.98

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102585438	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	UniProt:M1BKY1	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400018472	PGSC:PGSC0003DMG400018472
EnsemblPlants:PGSC0003DMT400047532	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000296BFFD	RefSeq:XP_006361268.1	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018472]

Coordinates

chr8:+:4044146..4050345

Molecular Weight (calculated)

40621.1 Da

IEP (calculated)

8.652

GRAVY (calculated)

-0.773

Length

361 amino acids

Sequence
(BLAST)

001: MELFPPQPDL SLQISPPNTT TNQEENNIDL SFWKRALESR KPHNININNT SCFDLSLSSN IPRPSSIINH QEPNYPSSQY FQNNTNFINN PFIPHHHNLG
101: LFRPISGVPL YNNHQNSSTN TLPIQSSPSS FNNYNNINHI SSSNSHFHQS HNHHQNGLMR SRFFSRFPTK RSMRAPRMRW TSTLHARFVH AVELLGGHER
201: ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDKSAAGA ASSGQSEVFD TVSSGDNSDD LVLEIKNSNK SELSVQQGRQ NMYNQEKDYG GLWSNSSSRE
301: SWQLHGKLGD YPGNLPSLEK NMEAKCTSYE GISTEVSSSS ITQASPKKLN LDFTLGIPNI S

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.