Factsheet for PGSC0003DMT400068508

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400004642
PGSC0003DMT400026783
PGSC0003DMT400030829
PGSC0003DMT400052841
PGSC0003DMT400054421
PGSC0003DMT400062617
PGSC0003DMT400064306
PGSC0003DMT400068387
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT2G38300.1	PGSC0003DMT400030829	AT2G34710.1	21798944
AT2G38300.1	PGSC0003DMT400054421	AT2G34710.1	21798944
AT2G38300.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT2G38300.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT2G38300.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT2G38300.1	PGSC0003DMT400026783	AT4G19700.1	21798944
AT2G38300.1	PGSC0003DMT400062617	AT4G19700.1	21798944
AT2G38300.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT2G38300.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT2G38300.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT2G38300.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005030.1.1	Tomato	nucleus	42.2	94.52
VIT_08s0058g00250.t01	Wine grape	nucleus	22.94	64.66
PGSC0003DMT400041071	Potato	nucleus	39.14	42.38
KRH65638	Soybean	nucleus	43.43	41.04
KRH75999	Soybean	nucleus	41.9	39.94
KRH49433	Soybean	nucleus	44.65	39.89
KRH00305	Soybean	nucleus	43.43	38.48
Os11t0106100-00	Rice	nucleus	22.63	34.74
AT2G38300.1	Thale cress	nucleus	33.03	31.76
Bra005124.1-P	Field mustard	nucleus	32.72	31.75
CDX91442	Canola	nucleus	33.64	31.43
CDX74898	Canola	nucleus	32.72	31.29
GSMUA_Achr7P22410_001	Banana	nucleus	30.58	30.12
PGSC0003DMT400077217	Potato	nucleus	34.56	29.66
PGSC0003DMT400074183	Potato	mitochondrion	13.76	28.48
TraesCS5A01G153000.1	Wheat	nucleus	27.83	27.91
TraesCS5B01G151800.1	Wheat	nucleus	28.75	27.89
PGSC0003DMT400011207	Potato	nucleus	20.18	27.85
TraesCS5D01G158300.1	Wheat	nucleus	27.52	27.78
TraesCS4A01G180900.1	Wheat	nucleus	27.83	26.69
TraesCS4D01G131500.1	Wheat	nucleus	26.91	25.81
Os12t0105600-01	Rice	nucleus	24.46	25.48
TraesCS4B01G136900.1	Wheat	nucleus	26.3	25.37
EES15503	Sorghum	nucleus	27.83	24.86
EES09087	Sorghum	nucleus	26.91	24.24
Zm00001d005087_P001	Maize	nucleus	24.77	23.28
PGSC0003DMT400026419	Potato	nucleus	24.46	22.99
PGSC0003DMT400075668	Potato	nucleus	19.57	20.78
PGSC0003DMT400002410	Potato	nucleus	13.15	19.91
PGSC0003DMT400042480	Potato	nucleus	11.62	18.54
PGSC0003DMT400038366	Potato	nucleus	14.07	17.83
PGSC0003DMT400030518	Potato	nucleus	15.9	16.88
PGSC0003DMT400042402	Potato	nucleus	7.95	14.86
PGSC0003DMT400047532	Potato	nucleus	14.98	13.57
PGSC0003DMT400043200	Potato	nucleus	15.6	12.81
PGSC0003DMT400017981	Potato	nucleus	14.68	12.73
PGSC0003DMT400034663	Potato	nucleus	15.6	11.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102604336	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CJ60	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400026644	PGSC:PGSC0003DMG400026644	EnsemblPlants:PGSC0003DMT400068508	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029588A4	RefSeq:XP_006359562.2	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026644]

Coordinates

chr9:-:10157544..10159512

Molecular Weight (calculated)

36715.3 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.685

Length

327 amino acids

Sequence
(BLAST)

001: MLEDSGETGC NSKTSSNFEK NEDEVLEENA SSKFKDGGSS SESTLEESEK IKPCVRPYVR SKMARLRWTP ELHLRFVHAV ERLGGQDRAT PKLVLQMMNI
101: KGLSIAHVKS HLQMFRSKKI DDQSQGIGHH HKLFMEGGDP NIFNMIQFPR FPAYHQRLNS TFRYGDASWN CHGNWMPSNT MGQRIPSFIN ERSNLQRNEI
201: KDVMGSSIGS PSGELTRLFH IASKAQARAF VGNGITSPPN LERAITPLKR KVSYNDQVDL NLYLGVKPRN EVTPNLDDND NDNISSLSLS LSSPLSYSRA
301: TRFIEDANID GKTENARRGA STLDLTL

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.