Factsheet for PGSC0003DMT400077217

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051060.2.1	Tomato	nucleus	60.37	90.55
PGSC0003DMT400041071	Potato	nucleus	30.97	39.07
Os11t0106100-00	Rice	nucleus	21.0	37.56
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	43.57	35.39
PGSC0003DMT400068508	Potato	nucleus	29.66	34.56
GSMUA_Achr7P22410_001	Banana	nucleus	29.13	33.43
TraesCS5D01G158300.1	Wheat	nucleus	26.25	30.86
TraesCS5A01G153000.1	Wheat	nucleus	26.25	30.67
PGSC0003DMT400074183	Potato	mitochondrion	12.6	30.38
TraesCS5B01G151800.1	Wheat	nucleus	26.25	29.67
PGSC0003DMT400011207	Potato	nucleus	18.37	29.54
TraesCS4D01G131500.1	Wheat	nucleus	25.2	28.15
TraesCS4A01G180900.1	Wheat	nucleus	24.67	27.57
TraesCS4B01G136900.1	Wheat	nucleus	24.15	27.14
Os12t0105600-01	Rice	nucleus	22.31	27.07
EES09087	Sorghum	nucleus	25.46	26.72
EES15503	Sorghum	nucleus	25.46	26.5
Zm00001d005087_P001	Maize	nucleus	23.88	26.15
PGSC0003DMT400026419	Potato	nucleus	22.57	24.71
PGSC0003DMT400002410	Potato	nucleus	12.6	22.22
PGSC0003DMT400075668	Potato	nucleus	17.59	21.75
PGSC0003DMT400042480	Potato	nucleus	11.02	20.49
PGSC0003DMT400038366	Potato	nucleus	13.39	19.77
PGSC0003DMT400030518	Potato	nucleus	14.44	17.86
PGSC0003DMT400042402	Potato	nucleus	8.14	17.71
PGSC0003DMT400047532	Potato	nucleus	16.01	16.9
PGSC0003DMT400043200	Potato	nucleus	15.75	15.08
PGSC0003DMT400017981	Potato	nucleus	14.44	14.59
PGSC0003DMT400034663	Potato	nucleus	14.7	12.44

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102588048	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CY22	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400030032	PGSC:PGSC0003DMG400030032	EnsemblPlants:PGSC0003DMT400077217	PFscan:PS51294	PANTHER:PTHR31314
PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296F38C	RefSeq:XP_006353444.1
SEG:seg	:	:	:	:	:

Description

Hypothetical cytoskeletal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030032]

Coordinates

chr6:-:29695707..29697594

Molecular Weight (calculated)

43625.4 Da

IEP (calculated)

8.726

GRAVY (calculated)

-1.072

Length

381 amino acids

Sequence
(BLAST)

001: MKGGSSSSTE DSKSNPKNQI EFEEEEEEEE EEDDIETEEN SKAQGTTRSS SSNSTVEENG KKTNSASVRQ YVRSKTPRLR WTPELHLRFV HAVERLGGQD
101: RATPKLVLQF MNIKGLSIAH VKSHLQMYRS KKTDDPNQIS TDGRFLLENG DHHIFNLTQL PRLQGFNQTS SSSLRYDNAL WNRQANSLYN PYNMNIGVGS
201: SISTRHGFAS HINGHSSHEH LFSWNKNIEI EKNQNRHNQR FWPPTQIGTS SAKQNLLMTY RDKDEIVKQF NRRSSEQEMM TQIRTKENNS LTSRGKWWMR
301: EEVVGTTTNT SSSNKRKIQD SEMDLDLNLS LKTTREYHQK RLKGEQVGDL LSLSLFSSST TTTTTSEENN AKKASTLDLT L

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.